| SRR3745125 | anther | wt | 1.26 | MC |
| SRR3745126 | anther | wt | 0.53 | MC |
| SRR3745127 | anther | wt | 0.84 | MC |
| SRR358795 | callus | wt | 2.53 | MC |
| SRR358796 | callus | wt | 1.99 | MC |
| SRR358797 | callus | wt | 2.32 | MC |
| SRR358798 | callus | wt | 1.82 | MC |
| SRR6320473 | carpel | wt | 4.96 | MC |
| SRR6320498 | carpel | wt | 4.23 | MC |
| SRR5560729 | caryopsis | wild_type | 2.24 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.42 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.94 | MC |
| SRR7265400 | coleoptile | 2dA | 0.98 | MC |
| SRR7265401 | coleoptile | 2dA | 0.69 | MC |
| SRR7265402 | coleoptile | 2dA | 1.98 | MC |
| SRR7265403 | coleoptile | 2dN | 1.70 | MC |
| SRR7265404 | coleoptile | 2dN | 2.05 | MC |
| SRR7265405 | coleoptile | 2dN | 1.77 | MC |
| SRR7265406 | coleoptile | 3dA | 1.44 | MC |
| SRR7265407 | coleoptile | 3dA | 1.34 | MC |
| SRR7265409 | coleoptile | 3dN | 3.46 | MC |
| SRR7265410 | coleoptile | 3dN | 1.22 | MC |
| SRR7265411 | coleoptile | 3dN | 1.06 | MC |
| SRR7265413 | coleoptile | 4dA | 4.06 | MC |
| SRR7265414 | coleoptile | 4dA | 3.61 | MC |
| SRR7265415 | coleoptile | 4dN | 1.24 | MC |
| SRR7265416 | coleoptile | 4dN | 0.95 | MC |
| SRR7265417 | coleoptile | 4dN | 1.44 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 3.25 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 2.67 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 2.90 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.54 | MC |
| SRR7265373 | embryo | dry seed 0 h | 3.30 | MC |
| SRR7265374 | embryo | dry seed 0 h | 2.25 | MC |
| SRR7265376 | embryo | 1hA | 3.14 | MC |
| SRR7265377 | embryo | 1hA | 2.97 | MC |
| SRR7265378 | embryo | 1hA | 2.88 | MC |
| SRR7265381 | embryo | 1hN | 2.34 | MC |
| SRR7265383 | embryo | 3hA | 2.72 | MC |
| SRR7265384 | embryo | 3hA | 2.48 | MC |
| SRR7265385 | embryo | 3hN | 2.48 | MC |
| SRR7265388 | embryo | 12hA | 1.49 | MC |
| SRR7265389 | embryo | 12hA | 0.54 | MC |
| SRR7265390 | embryo | 12hA | 1.66 | MC |
| SRR7265391 | embryo | 12hN | 0.48 | MC |
| SRR7265392 | embryo | 12hN | 3.41 | MC |
| SRR7265393 | embryo | 12hN | 0.74 | MC |
| SRR7265396 | embryo | 24hA | 2.81 | MC |
| SRR7265397 | embryo | 24hN | 2.34 | MC |
| SRR7265398 | embryo | 24hN | 1.43 | MC |
| SRR7265399 | embryo | 24hN | 1.00 | MC |
| SRR2338866 | endosprem | control | 3.23 | MC |
| SRR2338867 | endosprem | control | 0.97 | MC |
| SRR2338868 | endosprem | high_temperature | 0.82 | MC |
| SRR2338869 | endosprem | high_temperature | 1.69 | MC |
| SRR1213691 | flower | wt | 3.10 | MC |
| SRR8060835 | leaf | wild_type | 0.96 | MC |
| SRR8240824 | leaf | wild_type | 0.63 | MC |
| SRR8240825 | leaf | wild_type | 0.27 | MC |
| SRR8240826 | leaf | wild_type | 0.54 | MC |
| SRR8240819 | leaf | wild_type | 0.32 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.62 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 2.90 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.49 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.46 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.95 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.86 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.35 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.83 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.46 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.92 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 1.23 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.91 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.58 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.93 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.55 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.01 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.33 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.40 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.64 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.80 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.71 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.97 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.77 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.97 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.77 | MC |
| SRR1761528 | leaf | drought | 1.97 | MC |
| SRR1761529 | leaf | drought | 1.77 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.32 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.47 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.42 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.89 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.57 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.29 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.26 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.81 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.07 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.47 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.74 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.30 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 2.22 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.31 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.78 | MC |
| SRR1213692 | leaf | wt | 3.24 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.14 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.80 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.60 | MC |
| SRR6502088 | leaf | control | 0.36 | MC |
| SRR6502089 | leaf | control | 0.56 | MC |
| SRR6502090 | leaf | control | 0.46 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.46 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.81 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.43 | MC |
| SRR6502101 | leaf | control | 0.63 | MC |
| SRR5856933 | leaf | control | 1.44 | MC |
| SRR5856934 | leaf | control | 0.24 | MC |
| SRR5856935 | leaf | control | 1.05 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 1.20 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 1.98 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 5.55 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.50 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.69 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.93 | MC |
| SRR8582890 | panicle | AM | 0.23 | MC |
| SRR5110429 | panicle | Dawn | 0.63 | MC |
| SRR5110430 | panicle | Dawn | 0.68 | MC |
| SRR5110431 | panicle | Dawn | 1.40 | MC |
| SRR5110432 | panicle | Dawn | 1.72 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.66 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.54 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.21 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 2.31 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.43 | MC |
| SRR5110438 | panicle | Dawn + 7h | 3.03 | MC |
| SRR5110439 | panicle | Dawn + 7h | 2.49 | MC |
| SRR5110440 | panicle | Dawn + 7h | 3.37 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 2.32 | MC |
| SRR5110446 | panicle | Dusk | 3.60 | MC |
| SRR5110447 | panicle | Dusk | 3.63 | MC |
| SRR5110448 | panicle | Dusk | 3.12 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.11 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.55 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.50 | MC |
| SRR5110452 | panicle | Dawn + 14h | 2.98 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.10 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 2.27 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 3.49 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.52 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.90 | MC |
| SRR5110460 | panicle | Dawn + 21h | 2.03 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.41 | MC |
| SRR1633182 | panicle | WT | 2.58 | MC |
| SRR1633185 | panicle | WT | 5.17 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.23 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.38 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.40 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.59 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.48 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.40 | MC |
| SRR5126165 | root | "mock,14_days" | 2.37 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.88 | MC |
| SRR1213694 | root | wt | 1.55 | MC |
| SRR1213695 | root | wt | 0.94 | MC |
| SRR4947478 | root | control | 3.23 | MC |
| SRR4947479 | root | control | 3.94 | MC |
| SRR4947480 | root | control | 3.98 | MC |
| SRR4947481 | root | control | 1.08 | MC |
| SRR4947483 | root | Al | 2.72 | MC |
| SRR4947484 | root | Al | 2.51 | MC |
| SRR4947487 | root | control | 3.84 | MC |
| SRR4947488 | root | control | 3.64 | MC |
| SRR4947490 | root | Al | 4.30 | MC |
| SRR4947492 | root | Al | 1.53 | MC |
| SRR4947493 | root | Al | 2.25 | MC |
| SRR4947498 | root | Al | 2.66 | MC |
| SRR4947504 | root | control | 4.71 | MC |
| SRR4947505 | root | control | 3.68 | MC |
| SRR4947506 | root | Al | 3.20 | MC |
| SRR4947508 | root | Al | 5.07 | MC |
| SRR4947509 | root | Al | 5.16 | MC |
| SRR6502092 | root | 100 mM NaCl | 3.43 | MC |
| SRR6502093 | root | 100 mM NaCl | 3.38 | MC |
| SRR6502094 | root | control | 3.77 | MC |
| SRR6502095 | root | control | 2.94 | MC |
| SRR6502096 | root | control | 3.15 | MC |
| SRR6502103 | root | 100 mM NaCl | 3.68 | MC |
| SRR6502104 | root | 100 mM NaCl | 3.58 | MC |
| SRR6502106 | root | control | 3.09 | MC |
| SRR6502108 | root | control | 2.86 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.23 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.11 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.73 | MC |
| SRR6441555 | seedling | wild_type | 0.94 | MC |
| SRR2154086 | seedling | wt | 0.49 | MC |
| SRR2154082 | seedling | wt | 0.30 | MC |
| SRR2154085 | seedling | wt | 1.74 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.96 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.53 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.63 | MC |
| SRR1944583 | seedling | no_treatment | 2.38 | MC |
| SRR358791 | seedling | wt | 2.37 | MC |
| SRR358792 | seedling | wt | 2.70 | MC |
| SRR358793 | seedling | wt | 5.82 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.07 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 7.92 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.48 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.73 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.85 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.73 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.95 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.08 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.69 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.86 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.10 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.46 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.78 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.81 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.54 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.57 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.64 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.34 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.65 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.84 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.40 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.55 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.36 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.81 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.52 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.63 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.80 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.59 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.55 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.07 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.51 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.42 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.89 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.73 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 4.08 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 3.10 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 3.77 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 2.80 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 4.00 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 3.28 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 5.01 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 3.37 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.97 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 2.29 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 3.11 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 3.00 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 3.73 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 1.92 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 3.49 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 2.85 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 3.61 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 3.26 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 2.70 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 5.75 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 2.89 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 2.42 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 3.92 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 3.09 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 3.98 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 2.37 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 3.06 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.49 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.53 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.62 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.84 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.45 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 3.07 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 2.16 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.29 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.68 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.41 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 3.01 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.87 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.52 | MC |