| SRR4457249 | 2nd_leaf | DAH4 | 2.17 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 2.33 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.89 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 2.68 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.33 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 2.97 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 5.26 | MC |
| SRR6320473 | carpel | wt | 2.72 | MC |
| SRR5560727 | caryopsis | wild_type | 3.13 | MC |
| SRR5560728 | caryopsis | wild_type | 3.39 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 3.80 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 3.49 | MC |
| SRR4947495 | root | control | 1.94 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.91 | MC |
| SRR7265412 | coleoptile | 4dA | 3.14 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.03 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.64 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.86 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 2.84 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 3.94 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 2.54 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 3.75 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.17 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.89 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 2.44 | MC |
| SRR2338866 | endosprem | control | 3.72 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.84 | MC |
| SRR4457232 | flag_leaf | DAH4 | 2.41 | MC |
| SRR4457233 | flag_leaf | DAH4 | 1.08 | MC |
| SRR4457234 | flag_leaf | DAH12 | 2.34 | MC |
| SRR4457236 | flag_leaf | DAH12 | 3.30 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.28 | MC |
| SRR1213690 | flower | wt(flower buds) | 3.78 | MC |
| SRR1213691 | flower | wt | 2.34 | MC |
| SRR8060835 | leaf | wild_type | 1.13 | MC |
| SRR8060836 | leaf | wild_type | 0.52 | MC |
| SRR8060837 | leaf | wild_type | 1.54 | MC |
| SRR8240820 | leaf | wild_type | 2.47 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.43 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.52 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.93 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.18 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.58 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.60 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.60 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.99 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.49 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.07 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.52 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 2.69 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 6.55 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 3.74 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.08 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.52 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.55 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.78 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.90 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 7.33 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.08 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.73 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.98 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.17 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 2.32 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 3.14 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 1.06 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 1.06 | MC |
| SRR1761531 | leaf | control | 1.06 | MC |
| SRR504365 | leaf | wt | 2.09 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.14 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.31 | MC |
| SRR6417967 | leaf | H2O_control | 3.11 | MC |
| SRR6417968 | leaf | H2O_control | 2.46 | MC |
| SRR6417969 | leaf | H2O_control | 0.82 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 4.01 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.31 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.88 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.76 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.85 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.30 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.90 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.60 | MC |
| SRR1213692 | leaf | wt | 4.27 | MC |
| SRR1213693 | leaf | wt | 3.46 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 4.32 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 2.61 | MC |
| SRR5856927 | leaf | control | 0.69 | MC |
| SRR5856928 | leaf | control | 1.49 | MC |
| SRR5856930 | leaf | salt | 0.98 | MC |
| SRR5856931 | leaf | salt | 0.80 | MC |
| SRR5856932 | leaf | salt | 0.43 | MC |
| SRR5856933 | leaf | control | 1.50 | MC |
| SRR5856934 | leaf | control | 1.35 | MC |
| SRR5856936 | leaf | salt | 1.77 | MC |
| SRR5856937 | leaf | salt | 0.79 | MC |
| SRR5856938 | leaf | salt | 1.30 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 5.16 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 3.05 | MC |
| SRR6168973 | leaf | none (control) | 1.05 | MC |
| SRR6168974 | leaf | none (control) | 1.32 | MC |
| SRR6168975 | leaf | none (control) | 0.73 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.25 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.36 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.78 | MC |
| SRR6168979 | leaf | none (control) | 1.22 | MC |
| SRR6168981 | leaf | none (control) | 1.99 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.13 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.87 | MC |
| SRR8582888 | panicle | AM | 0.43 | MC |
| SRR8582889 | panicle | AM | 0.90 | MC |
| SRR8582890 | panicle | AM | 0.99 | MC |
| SRR8582891 | panicle | PM | 0.96 | MC |
| SRR8582892 | panicle | PM | 0.85 | MC |
| SRR8582893 | panicle | PM | 1.39 | MC |
| SRR4947496 | root | control | 1.60 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 2.06 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 2.81 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 2.61 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 2.05 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 3.25 | MC |
| SRR5126148 | root | "mock,1_day" | 0.72 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.99 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.07 | MC |
| SRR5126153 | root | "mock,7_days" | 2.21 | MC |
| SRR5126157 | root | "mock,7_days" | 1.76 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.87 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 3.91 | MC |
| SRR5126165 | root | "mock,14_days" | 3.42 | MC |
| SRR5126167 | root | "mock,14_days" | 3.87 | MC |
| SRR5126169 | root | "mock,14_days" | 1.01 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.89 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.42 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 2.44 | MC |
| SRR1213694 | root | wt | 1.17 | MC |
| SRR4947478 | root | control | 3.17 | MC |
| SRR4947479 | root | control | 3.10 | MC |
| SRR4947482 | root | Al | 2.48 | MC |
| SRR4947483 | root | Al | 3.37 | MC |
| SRR4947487 | root | control | 2.19 | MC |
| SRR4947488 | root | control | 2.31 | MC |
| SRR4947492 | root | Al | 3.58 | MC |
| SRR4947493 | root | Al | 0.84 | MC |
| SRR4947494 | root | control | 1.36 | MC |
| SRR4947497 | root | control | 3.99 | MC |
| SRR4947498 | root | Al | 2.68 | MC |
| SRR4947499 | root | Al | 4.32 | MC |
| SRR4947501 | root | Al | 3.27 | MC |
| SRR4947503 | root | control | 0.82 | MC |
| SRR4947504 | root | control | 1.01 | MC |
| SRR4947505 | root | control | 2.99 | MC |
| SRR4947507 | root | Al | 4.09 | MC |
| SRR4947508 | root | Al | 3.64 | MC |
| SRR6502093 | root | 100 mM NaCl | 3.03 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.75 | MC |
| SRR1740436 | root_differentiation_zone | wt | 3.15 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.73 | MC |
| SRR6441554 | seedling | wild_type | 0.96 | MC |
| SRR6441555 | seedling | wild_type | 0.70 | MC |
| SRR2154082 | seedling | wt | 3.33 | MC |
| SRR2154085 | seedling | wt | 1.65 | MC |
| SRR2154087 | seedling | wt | 3.05 | MC |
| SRR3098741 | seedling | wt | 0.55 | MC |
| SRR3098743 | seedling | wt | 2.04 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.89 | MC |
| SRR2857721 | seedling | drought_stress_6h | 2.59 | MC |
| SRR358794 | seedling | wt | 0.55 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.14 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 8.82 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.79 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.73 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.36 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.24 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 3.07 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.94 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.35 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.51 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.93 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.09 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.57 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 3.21 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.66 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 2.57 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 7.42 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 5.77 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 5.80 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 8.63 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 7.87 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 4.26 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 3.32 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 7.14 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.25 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 2.67 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 3.03 | MC |