| SRR4457256 | 2nd_leaf | DAH20 | 0.42 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.64 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.52 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.36 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.28 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.60 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.62 | MC |
| SRR3745125 | anther | wt | 2.21 | MC |
| SRR5560729 | caryopsis | wild_type | 0.75 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.41 | MC |
| SRR7265400 | coleoptile | 2dA | 2.11 | MC |
| SRR7265401 | coleoptile | 2dA | 1.69 | MC |
| SRR7265402 | coleoptile | 2dA | 3.12 | MC |
| SRR7265403 | coleoptile | 2dN | 0.69 | MC |
| SRR7265404 | coleoptile | 2dN | 0.40 | MC |
| SRR7265406 | coleoptile | 3dA | 1.06 | MC |
| SRR7265407 | coleoptile | 3dA | 1.37 | MC |
| SRR7265409 | coleoptile | 3dN | 0.48 | MC |
| SRR7265412 | coleoptile | 4dA | 0.69 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.66 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.65 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.33 | MC |
| SRR7265373 | embryo | dry seed 0 h | 3.44 | MC |
| SRR7265376 | embryo | 1hA | 0.46 | MC |
| SRR7265377 | embryo | 1hA | 2.46 | MC |
| SRR7265378 | embryo | 1hA | 1.75 | MC |
| SRR7265379 | embryo | 1hN | 2.56 | MC |
| SRR7265381 | embryo | 1hN | 0.79 | MC |
| SRR7265382 | embryo | 3hA | 3.74 | MC |
| SRR7265383 | embryo | 3hA | 1.67 | MC |
| SRR7265384 | embryo | 3hA | 2.56 | MC |
| SRR7265385 | embryo | 3hN | 3.43 | MC |
| SRR7265386 | embryo | 3hN | 0.54 | MC |
| SRR7265387 | embryo | 3hN | 2.08 | MC |
| SRR7265388 | embryo | 12hA | 3.09 | MC |
| SRR7265389 | embryo | 12hA | 3.55 | MC |
| SRR7265390 | embryo | 12hA | 0.52 | MC |
| SRR7265391 | embryo | 12hN | 0.48 | MC |
| SRR7265392 | embryo | 12hN | 3.20 | MC |
| SRR7265395 | embryo | 24hA | 0.50 | MC |
| SRR7265396 | embryo | 24hA | 0.61 | MC |
| SRR7265397 | embryo | 24hN | 1.27 | MC |
| SRR7265398 | embryo | 24hN | 2.10 | MC |
| SRR7265399 | embryo | 24hN | 1.39 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.33 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.27 | MC |
| SRR4457242 | flag_leaf | DAH28 | 2.72 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.39 | MC |
| SRR4457246 | flag_leaf | DAH44 | 2.67 | MC |
| SRR4457248 | flag_leaf | DAH44 | 0.92 | MC |
| SRR8060836 | leaf | wild_type | 0.29 | MC |
| SRR8240820 | leaf | wild_type | 0.28 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.57 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.43 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.47 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.64 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.67 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.88 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.70 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.72 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.02 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.14 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.21 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.72 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.16 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.29 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.82 | MC |
| SRR504365 | leaf | wt | 0.57 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.50 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.20 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.33 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 1.33 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.48 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.59 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.36 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.26 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.28 | MC |
| SRR1213693 | leaf | wt | 1.05 | MC |
| SRR5856927 | leaf | control | 0.23 | MC |
| SRR5856933 | leaf | control | 0.27 | MC |
| SRR5856936 | leaf | salt | 0.37 | MC |
| SRR5856937 | leaf | salt | 1.29 | MC |
| SRR5856938 | leaf | salt | 0.33 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 2.33 | MC |
| SRR6168973 | leaf | none (control) | 0.53 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.48 | MC |
| SRR6168979 | leaf | none (control) | 0.23 | MC |
| SRR8582889 | panicle | AM | 0.16 | MC |
| SRR5110429 | panicle | Dawn | 0.47 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 2.90 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.63 | MC |
| SRR5110445 | panicle | Dusk | 1.38 | MC |
| SRR5110447 | panicle | Dusk | 1.28 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.18 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.48 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.40 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.51 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.46 | MC |
| SRR1633182 | panicle | WT | 4.18 | MC |
| SRR1633185 | panicle | WT | 4.25 | MC |
| SRR5126147 | root | "mock,1_day" | 0.31 | MC |
| SRR5126153 | root | "mock,7_days" | 0.47 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.44 | MC |
| SRR5126167 | root | "mock,14_days" | 0.30 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.12 | MC |
| SRR1213694 | root | wt | 0.34 | MC |
| SRR1213695 | root | wt | 0.76 | MC |
| SRR4947490 | root | Al | 0.69 | MC |
| SRR4947501 | root | Al | 2.90 | MC |
| SRR4947502 | root | control | 5.09 | MC |
| SRR4947508 | root | Al | 1.53 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.50 | MC |
| SRR6502107 | root | control | 0.26 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.75 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.70 | MC |
| SRR1740428 | root_meristematic_zone | wt | 2.68 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.85 | MC |
| SRR2154082 | seedling | wt | 0.97 | MC |
| SRR2154083 | seedling | wt | 2.31 | MC |
| SRR3098742 | seedling | wt | 0.19 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.39 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.78 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.11 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 2.09 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 2.96 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.81 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.32 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.78 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.78 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.58 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.56 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.12 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.51 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.50 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 1.08 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 0.95 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.14 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.55 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 0.69 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.71 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.17 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 0.89 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.11 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.30 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.90 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.28 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.40 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 2.07 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.83 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.35 | MC |