| SRR4457255 | 2nd_leaf | DAH20 | 0.50 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.26 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.53 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 0.72 | MC |
| SRR358796 | callus | wt | 3.56 | MC |
| SRR6320473 | carpel | wt | 1.40 | MC |
| SRR5560727 | caryopsis | wild_type | 1.61 | MC |
| SRR5560728 | caryopsis | wild_type | 2.53 | MC |
| SRR5560729 | caryopsis | wild_type | 4.69 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 3.59 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 3.83 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.99 | MC |
| SRR4947495 | root | control | 2.30 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 2.70 | MC |
| SRR7265412 | coleoptile | 4dA | 1.68 | MC |
| SRR7265416 | coleoptile | 4dN | 3.04 | MC |
| SRR7265417 | coleoptile | 4dN | 3.81 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 2.87 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 2.21 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 3.82 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 3.47 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 4.11 | MC |
| SRR7265373 | embryo | dry seed 0 h | 2.48 | MC |
| SRR7265374 | embryo | dry seed 0 h | 2.26 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.85 | MC |
| SRR7265376 | embryo | 1hA | 1.54 | MC |
| SRR7265377 | embryo | 1hA | 2.57 | MC |
| SRR7265378 | embryo | 1hA | 1.32 | MC |
| SRR7265379 | embryo | 1hN | 2.71 | MC |
| SRR7265380 | embryo | 1hN | 1.53 | MC |
| SRR7265381 | embryo | 1hN | 3.08 | MC |
| SRR7265382 | embryo | 3hA | 3.98 | MC |
| SRR7265383 | embryo | 3hA | 2.06 | MC |
| SRR7265384 | embryo | 3hA | 2.85 | MC |
| SRR7265385 | embryo | 3hN | 1.90 | MC |
| SRR7265386 | embryo | 3hN | 1.25 | MC |
| SRR7265387 | embryo | 3hN | 0.67 | MC |
| SRR2338869 | endosprem | high_temperature | 0.78 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.67 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.67 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.69 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.55 | MC |
| SRR1213691 | flower | wt | 3.85 | MC |
| SRR8060835 | leaf | wild_type | 0.59 | MC |
| SRR8060837 | leaf | wild_type | 0.92 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.66 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.26 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.33 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.13 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.82 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.79 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.92 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.07 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.38 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.08 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.57 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.75 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.56 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.03 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 1.43 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 1.24 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.43 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.97 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.92 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.13 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.40 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.37 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.47 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.18 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.62 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.51 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.05 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.14 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.99 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.41 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.95 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 4.73 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 3.49 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 1.85 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 2.50 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 2.50 | MC |
| SRR1761529 | leaf | drought | 2.50 | MC |
| SRR504365 | leaf | wt | 0.31 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.91 | MC |
| SRR6417968 | leaf | H2O_control | 0.67 | MC |
| SRR6417969 | leaf | H2O_control | 1.07 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 2.00 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.24 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.44 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.45 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 2.26 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.84 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.14 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.43 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.26 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.66 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.35 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.88 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 3.36 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 3.17 | MC |
| SRR1213692 | leaf | wt | 0.60 | MC |
| SRR1213693 | leaf | wt | 2.07 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 3.00 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.77 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.22 | MC |
| SRR6502089 | leaf | control | 3.63 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 2.55 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 4.16 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.43 | MC |
| SRR6502100 | leaf | control | 1.45 | MC |
| SRR6502101 | leaf | control | 0.89 | MC |
| SRR5856927 | leaf | control | 1.57 | MC |
| SRR5856928 | leaf | control | 0.59 | MC |
| SRR5856930 | leaf | salt | 0.33 | MC |
| SRR5856931 | leaf | salt | 0.27 | MC |
| SRR5856932 | leaf | salt | 0.32 | MC |
| SRR5856933 | leaf | control | 0.60 | MC |
| SRR5856934 | leaf | control | 1.05 | MC |
| SRR5856935 | leaf | control | 0.99 | MC |
| SRR5856936 | leaf | salt | 0.20 | MC |
| SRR5856938 | leaf | salt | 0.38 | MC |
| SRR6168973 | leaf | none (control) | 3.07 | MC |
| SRR6168974 | leaf | none (control) | 3.48 | MC |
| SRR6168975 | leaf | none (control) | 0.86 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.67 | MC |
| SRR6168979 | leaf | none (control) | 0.23 | MC |
| SRR6168981 | leaf | none (control) | 0.44 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.35 | MC |
| SRR5110430 | panicle | Dawn | 2.41 | MC |
| SRR5110431 | panicle | Dawn | 3.15 | MC |
| SRR4947496 | root | control | 1.04 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.56 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 3.86 | MC |
| SRR5110437 | panicle | Dawn + 7h | 3.08 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.66 | MC |
| SRR5110440 | panicle | Dawn + 7h | 5.53 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 0.91 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 2.92 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 3.58 | MC |
| SRR5110445 | panicle | Dusk | 1.71 | MC |
| SRR5110446 | panicle | Dusk | 3.62 | MC |
| SRR5110448 | panicle | Dusk | 4.18 | MC |
| SRR5110451 | panicle | Dawn + 14h | 2.11 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.20 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.67 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.78 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.54 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.04 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.42 | MC |
| SRR5126157 | root | "mock,7_days" | 3.87 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.01 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 3.05 | MC |
| SRR5126167 | root | "mock,14_days" | 2.51 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.17 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 3.28 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.25 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 2.39 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.80 | MC |
| SRR1213694 | root | wt | 0.77 | MC |
| SRR1213695 | root | wt | 2.16 | MC |
| SRR4947478 | root | control | 0.82 | MC |
| SRR4947479 | root | control | 1.39 | MC |
| SRR4947480 | root | control | 1.14 | MC |
| SRR4947481 | root | control | 2.59 | MC |
| SRR4947482 | root | Al | 1.40 | MC |
| SRR4947484 | root | Al | 2.83 | MC |
| SRR4947487 | root | control | 0.85 | MC |
| SRR4947488 | root | control | 1.50 | MC |
| SRR4947491 | root | Al | 3.72 | MC |
| SRR4947492 | root | Al | 2.29 | MC |
| SRR4947494 | root | control | 3.24 | MC |
| SRR4947498 | root | Al | 2.63 | MC |
| SRR4947499 | root | Al | 2.27 | MC |
| SRR4947500 | root | Al | 2.84 | MC |
| SRR4947501 | root | Al | 2.93 | MC |
| SRR4947504 | root | control | 2.86 | MC |
| SRR4947505 | root | control | 1.06 | MC |
| SRR4947506 | root | Al | 2.48 | MC |
| SRR4947507 | root | Al | 3.83 | MC |
| SRR4947508 | root | Al | 2.03 | MC |
| SRR4947509 | root | Al | 1.60 | MC |
| SRR6502092 | root | 100 mM NaCl | 4.07 | MC |
| SRR6502094 | root | control | 4.69 | MC |
| SRR6502095 | root | control | 2.30 | MC |
| SRR6502106 | root | control | 3.52 | MC |
| SRR1740432 | root_elongation_zone | wt | 2.60 | MC |
| SRR1740433 | root_elongation_zone | wt | 2.32 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.72 | MC |
| SRR6441554 | seedling | wild_type | 2.30 | MC |
| SRR6441555 | seedling | wild_type | 1.28 | MC |
| SRR2154086 | seedling | wt | 2.64 | MC |
| SRR2154083 | seedling | wt | 1.90 | MC |
| SRR2154084 | seedling | wt | 3.00 | MC |
| SRR2154085 | seedling | wt | 2.03 | MC |
| SRR2154087 | seedling | wt | 1.13 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.21 | MC |
| SRR1944583 | seedling | no_treatment | 3.23 | MC |
| SRR358791 | seedling | wt | 1.79 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.63 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.92 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.83 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.32 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.12 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.38 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.62 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.17 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.30 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.99 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.42 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.31 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.43 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.74 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.83 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.88 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.49 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 2.33 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.89 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.65 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.88 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.90 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.75 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.65 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.51 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.10 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 1.15 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 0.72 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 0.86 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 2.08 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 0.76 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.99 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 0.94 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.08 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 2.06 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.68 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.33 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.22 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.73 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.72 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 4.43 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 3.12 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 2.83 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.09 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 2.31 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 2.32 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 3.43 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.55 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.97 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.49 | MC |