| SRR4457250 | 2nd_leaf | DAH4 | 0.85 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.31 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 1.43 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.71 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 1.03 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.81 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.13 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.92 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 1.21 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.62 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.44 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.79 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 2.87 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.79 | MC |
| SRR3745125 | anther | wt | 1.65 | MC |
| SRR3745127 | anther | wt | 2.14 | MC |
| SRR5560727 | caryopsis | wild_type | 1.61 | MC |
| SRR5560728 | caryopsis | wild_type | 2.50 | MC |
| SRR5560729 | caryopsis | wild_type | 4.84 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.52 | MC |
| SRR4947495 | root | control | 1.58 | MC |
| SRR7265403 | coleoptile | 2dN | 3.05 | MC |
| SRR7265404 | coleoptile | 2dN | 3.86 | MC |
| SRR7265410 | coleoptile | 3dN | 1.76 | MC |
| SRR7265411 | coleoptile | 3dN | 3.38 | MC |
| SRR7265413 | coleoptile | 4dA | 4.17 | MC |
| SRR7265414 | coleoptile | 4dA | 3.74 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.81 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.95 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.39 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.81 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.66 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.96 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.44 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.23 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 3.42 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.36 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 2.22 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.40 | MC |
| SRR7265373 | embryo | dry seed 0 h | 2.67 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.94 | MC |
| SRR7265377 | embryo | 1hA | 2.63 | MC |
| SRR7265378 | embryo | 1hA | 2.70 | MC |
| SRR7265379 | embryo | 1hN | 2.31 | MC |
| SRR7265383 | embryo | 3hA | 2.05 | MC |
| SRR7265385 | embryo | 3hN | 3.23 | MC |
| SRR7265388 | embryo | 12hA | 4.01 | MC |
| SRR7265389 | embryo | 12hA | 3.77 | MC |
| SRR7265390 | embryo | 12hA | 4.41 | MC |
| SRR7265394 | embryo | 24hA | 3.28 | MC |
| SRR7265396 | embryo | 24hA | 3.35 | MC |
| SRR7265397 | embryo | 24hN | 4.66 | MC |
| SRR7265398 | embryo | 24hN | 3.56 | MC |
| SRR7265399 | embryo | 24hN | 3.21 | MC |
| SRR2338867 | endosprem | control | 1.43 | MC |
| SRR976168 | flag_leaf | wild_type | 2.53 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.75 | MC |
| SRR4457232 | flag_leaf | DAH4 | 1.10 | MC |
| SRR4457233 | flag_leaf | DAH4 | 1.54 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.70 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.60 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.16 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.40 | MC |
| SRR4457238 | flag_leaf | DAH20 | 1.60 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.13 | MC |
| SRR4457242 | flag_leaf | DAH28 | 1.43 | MC |
| SRR4457243 | flag_leaf | DAH36 | 2.63 | MC |
| SRR4457244 | flag_leaf | DAH36 | 2.74 | MC |
| SRR4457247 | flag_leaf | DAH44 | 3.26 | MC |
| SRR4457248 | flag_leaf | DAH44 | 2.74 | MC |
| SRR1213690 | flower | wt(flower buds) | 3.14 | MC |
| SRR1213691 | flower | wt | 3.37 | MC |
| SRR8060836 | leaf | wild_type | 2.77 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 2.29 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.88 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.90 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.61 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.56 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.76 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.15 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.83 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.57 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.08 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.03 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.85 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.08 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.08 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 2.66 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.53 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.51 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.89 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.66 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.83 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 8.23 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.38 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.76 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.46 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.43 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 2.72 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 3.35 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 2.87 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 3.98 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 4.77 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 3.98 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 4.77 | MC |
| SRR1761529 | leaf | drought | 3.98 | MC |
| SRR1761531 | leaf | control | 4.77 | MC |
| SRR504365 | leaf | wt | 2.64 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.05 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.23 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.27 | MC |
| SRR6417969 | leaf | H2O_control | 1.14 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.12 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.45 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 3.51 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 4.01 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.81 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 3.70 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 2.62 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.75 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.89 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.43 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.41 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 2.00 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.61 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 3.51 | MC |
| SRR5856927 | leaf | control | 0.92 | MC |
| SRR5856928 | leaf | control | 0.91 | MC |
| SRR5856929 | leaf | control | 1.27 | MC |
| SRR5856930 | leaf | salt | 0.81 | MC |
| SRR5856931 | leaf | salt | 0.87 | MC |
| SRR5856932 | leaf | salt | 0.31 | MC |
| SRR5856933 | leaf | control | 1.28 | MC |
| SRR5856934 | leaf | control | 1.19 | MC |
| SRR5856935 | leaf | control | 0.80 | MC |
| SRR5856936 | leaf | salt | 0.54 | MC |
| SRR5856937 | leaf | salt | 0.39 | MC |
| SRR5856938 | leaf | salt | 0.45 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 1.51 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 4.49 | MC |
| SRR6168974 | leaf | none (control) | 1.16 | MC |
| SRR6168975 | leaf | none (control) | 1.11 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.72 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.40 | MC |
| SRR6168979 | leaf | none (control) | 0.64 | MC |
| SRR6168981 | leaf | none (control) | 1.60 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.60 | MC |
| SRR8582892 | panicle | PM | 3.16 | MC |
| SRR5110429 | panicle | Dawn | 2.06 | MC |
| SRR4947496 | root | control | 1.37 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.16 | MC |
| SRR5110440 | panicle | Dawn + 7h | 3.57 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 3.83 | MC |
| SRR5110446 | panicle | Dusk | 3.80 | MC |
| SRR5110447 | panicle | Dusk | 3.44 | MC |
| SRR5110448 | panicle | Dusk | 4.29 | MC |
| SRR5110450 | panicle | Dawn + 14h | 2.08 | MC |
| SRR5110451 | panicle | Dawn + 14h | 3.40 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 2.12 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 3.15 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.63 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 3.18 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 2.19 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.28 | MC |
| SRR5126147 | root | "mock,1_day" | 3.16 | MC |
| SRR5126148 | root | "mock,1_day" | 1.38 | MC |
| SRR5126149 | root | "mock,1_day" | 2.51 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 3.25 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 3.56 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.74 | MC |
| SRR5126155 | root | "mock,7_days" | 4.27 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 5.20 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 4.52 | MC |
| SRR5126165 | root | "mock,14_days" | 4.64 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 4.82 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 3.28 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 2.63 | MC |
| SRR4947478 | root | control | 2.54 | MC |
| SRR4947481 | root | control | 0.96 | MC |
| SRR4947483 | root | Al | 2.18 | MC |
| SRR4947484 | root | Al | 2.53 | MC |
| SRR4947485 | root | Al | 3.58 | MC |
| SRR4947489 | root | control | 1.52 | MC |
| SRR4947494 | root | control | 2.58 | MC |
| SRR4947497 | root | control | 5.37 | MC |
| SRR4947505 | root | control | 3.56 | MC |
| SRR4947506 | root | Al | 2.15 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.85 | MC |
| SRR6502106 | root | control | 1.29 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.64 | MC |
| SRR1740432 | root_elongation_zone | wt | 2.07 | MC |
| SRR6441554 | seedling | wild_type | 1.59 | MC |
| SRR6441555 | seedling | wild_type | 1.44 | MC |
| SRR2154086 | seedling | wt | 2.45 | MC |
| SRR2154082 | seedling | wt | 2.14 | MC |
| SRR2154083 | seedling | wt | 3.44 | MC |
| SRR2154084 | seedling | wt | 0.63 | MC |
| SRR2154085 | seedling | wt | 1.56 | MC |
| SRR2154087 | seedling | wt | 2.03 | MC |
| SRR3098741 | seedling | wt | 1.13 | MC |
| SRR3098742 | seedling | wt | 0.63 | MC |
| SRR3098743 | seedling | wt | 0.37 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.43 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 2.23 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.40 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.62 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.00 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.07 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 3.04 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.93 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 1.84 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.22 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.52 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.18 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 0.84 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.80 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.32 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.48 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 3.66 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 2.33 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.52 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 3.69 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 3.51 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.84 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 2.10 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 2.41 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 3.98 | MC |