| SRR4457252 | 2nd_leaf | DAH12 | 0.27 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.08 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.25 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.46 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 2.76 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.87 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 4.65 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 4.19 | MC |
| SRR3745125 | anther | wt | 4.45 | MC |
| SRR3745127 | anther | wt | 4.76 | MC |
| SRR358796 | callus | wt | 1.89 | MC |
| SRR358797 | callus | wt | 1.36 | MC |
| SRR5560728 | caryopsis | wild_type | 3.58 | MC |
| SRR5560729 | caryopsis | wild_type | 1.59 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.51 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.64 | MC |
| SRR7265400 | coleoptile | 2dA | 1.19 | MC |
| SRR7265401 | coleoptile | 2dA | 1.25 | MC |
| SRR7265402 | coleoptile | 2dA | 1.88 | MC |
| SRR7265406 | coleoptile | 3dA | 3.06 | MC |
| SRR7265407 | coleoptile | 3dA | 2.21 | MC |
| SRR7265408 | coleoptile | 3dA | 1.17 | MC |
| SRR7265415 | coleoptile | 4dN | 0.81 | MC |
| SRR7265417 | coleoptile | 4dN | 0.79 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 2.42 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 2.35 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.71 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.76 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.58 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.81 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.09 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.85 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.80 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.39 | MC |
| SRR2338867 | endosprem | control | 0.86 | MC |
| SRR2338868 | endosprem | high_temperature | 0.96 | MC |
| SRR2338869 | endosprem | high_temperature | 0.99 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.27 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.31 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.31 | MC |
| SRR4457240 | flag_leaf | DAH28 | 2.29 | MC |
| SRR4457241 | flag_leaf | DAH28 | 2.26 | MC |
| SRR4457242 | flag_leaf | DAH28 | 3.20 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.80 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.30 | MC |
| SRR1213691 | flower | wt | 1.41 | MC |
| SRR8060836 | leaf | wild_type | 0.34 | MC |
| SRR8240820 | leaf | wild_type | 0.29 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.50 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.58 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.77 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.41 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.63 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.11 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.17 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.96 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.73 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.17 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.68 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.07 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.63 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.33 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.99 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 1.36 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 2.27 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.29 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.95 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.15 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.43 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.36 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.78 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.38 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.47 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.39 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.67 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.19 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.03 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.37 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.10 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.37 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.10 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.37 | MC |
| SRR1761528 | leaf | drought | 1.10 | MC |
| SRR1761529 | leaf | drought | 1.37 | MC |
| SRR504365 | leaf | wt | 0.43 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.36 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.76 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.68 | MC |
| SRR6417967 | leaf | H2O_control | 1.68 | MC |
| SRR6417968 | leaf | H2O_control | 3.18 | MC |
| SRR6417969 | leaf | H2O_control | 1.76 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.66 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 2.79 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 2.57 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.26 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 3.12 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.21 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.96 | MC |
| SRR8611900 | leaf | Non-inoculated | 2.42 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.16 | MC |
| SRR8611902 | leaf | Non-inoculated | 2.46 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 3.52 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 3.52 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 2.77 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.20 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.38 | MC |
| SRR1213692 | leaf | wt | 1.37 | MC |
| SRR1213693 | leaf | wt | 2.79 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.52 | MC |
| SRR6502088 | leaf | control | 0.53 | MC |
| SRR6502089 | leaf | control | 0.46 | MC |
| SRR6502100 | leaf | control | 0.37 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 1.53 | MC |
| SRR6168974 | leaf | none (control) | 0.96 | MC |
| SRR6168975 | leaf | none (control) | 1.00 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.89 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.74 | MC |
| SRR6168979 | leaf | none (control) | 1.15 | MC |
| SRR6168980 | leaf | none (control) | 0.58 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.60 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.00 | MC |
| SRR8582889 | panicle | AM | 0.17 | MC |
| SRR8582890 | panicle | AM | 0.19 | MC |
| SRR8582891 | panicle | PM | 1.09 | MC |
| SRR8582893 | panicle | PM | 0.43 | MC |
| SRR5110429 | panicle | Dawn | 0.53 | MC |
| SRR5110430 | panicle | Dawn | 0.88 | MC |
| SRR5110431 | panicle | Dawn | 2.00 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 0.69 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.08 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.81 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.07 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 0.89 | MC |
| SRR5110445 | panicle | Dusk | 0.75 | MC |
| SRR5110446 | panicle | Dusk | 0.44 | MC |
| SRR5110450 | panicle | Dawn + 14h | 0.95 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.26 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.51 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.67 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.07 | MC |
| SRR5110460 | panicle | Dawn + 21h | 2.00 | MC |
| SRR1633182 | panicle | WT | 0.46 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 2.32 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.13 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 2.77 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.98 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.71 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.63 | MC |
| SRR5126147 | root | "mock,1_day" | 0.96 | MC |
| SRR5126148 | root | "mock,1_day" | 0.41 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.36 | MC |
| SRR5126155 | root | "mock,7_days" | 1.00 | MC |
| SRR5126157 | root | "mock,7_days" | 1.92 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.40 | MC |
| SRR5126167 | root | "mock,14_days" | 0.63 | MC |
| SRR5126169 | root | "mock,14_days" | 0.64 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.63 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.29 | MC |
| SRR3098742 | seedling | wt | 0.22 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.56 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.63 | MC |
| SRR1944583 | seedling | no_treatment | 1.16 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.81 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 9.33 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.02 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.44 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.75 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 2.28 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 2.19 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 2.48 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 2.37 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.05 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.19 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.21 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.39 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.38 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.45 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.28 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.14 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.09 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.35 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.02 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.61 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.17 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.20 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.55 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.09 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.55 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.22 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.13 | MC |