| SRR4457251 | 2nd_leaf | DAH4 | 1.67 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.51 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 1.55 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 3.33 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 3.63 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 2.47 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 3.58 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 2.48 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 2.83 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.00 | MC |
| SRR5560727 | caryopsis | wild_type | 4.09 | MC |
| SRR5560729 | caryopsis | wild_type | 1.19 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 2.93 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 3.28 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.62 | MC |
| SRR4947495 | root | control | 4.53 | MC |
| SRR7265405 | coleoptile | 2dN | 3.69 | MC |
| SRR7265406 | coleoptile | 3dA | 2.55 | MC |
| SRR7265409 | coleoptile | 3dN | 4.05 | MC |
| SRR7265411 | coleoptile | 3dN | 2.31 | MC |
| SRR7265413 | coleoptile | 4dA | 1.78 | MC |
| SRR7265414 | coleoptile | 4dA | 2.27 | MC |
| SRR7265416 | coleoptile | 4dN | 3.38 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 2.68 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 3.93 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 2.21 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.03 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 3.11 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.34 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.63 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.35 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.29 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 2.23 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 2.95 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.80 | MC |
| SRR7265378 | embryo | 1hA | 2.19 | MC |
| SRR7265380 | embryo | 1hN | 2.04 | MC |
| SRR7265384 | embryo | 3hA | 1.94 | MC |
| SRR7265385 | embryo | 3hN | 1.91 | MC |
| SRR7265390 | embryo | 12hA | 2.55 | MC |
| SRR4457232 | flag_leaf | DAH4 | 2.93 | MC |
| SRR4457233 | flag_leaf | DAH4 | 2.16 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.49 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.50 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.77 | MC |
| SRR4457238 | flag_leaf | DAH20 | 3.33 | MC |
| SRR4457240 | flag_leaf | DAH28 | 2.73 | MC |
| SRR4457241 | flag_leaf | DAH28 | 2.03 | MC |
| SRR4457242 | flag_leaf | DAH28 | 2.46 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.86 | MC |
| SRR4457245 | flag_leaf | DAH36 | 2.45 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.73 | MC |
| SRR4457248 | flag_leaf | DAH44 | 3.91 | MC |
| SRR8060837 | leaf | wild_type | 0.29 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 2.57 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 3.66 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 3.90 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 3.91 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.66 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.47 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.87 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 6.11 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.57 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.41 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.29 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.08 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 6.15 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 4.48 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.10 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 3.24 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.48 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.14 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.69 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.04 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.51 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 7.30 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.59 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.02 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.73 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.92 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.12 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.31 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 2.68 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 4.68 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 2.78 | MC |
| SRR504365 | leaf | wt | 3.86 | MC |
| SRR6417968 | leaf | H2O_control | 3.00 | MC |
| SRR8611900 | leaf | Non-inoculated | 2.19 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.56 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.61 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.70 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.51 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 2.13 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 2.36 | MC |
| SRR1213692 | leaf | wt | 3.16 | MC |
| SRR1213693 | leaf | wt | 3.32 | MC |
| SRR6502088 | leaf | control | 0.30 | MC |
| SRR6502101 | leaf | control | 3.67 | MC |
| SRR5856927 | leaf | control | 2.01 | MC |
| SRR5856928 | leaf | control | 2.30 | MC |
| SRR5856929 | leaf | control | 1.56 | MC |
| SRR5856930 | leaf | salt | 1.65 | MC |
| SRR5856931 | leaf | salt | 1.86 | MC |
| SRR5856934 | leaf | control | 1.15 | MC |
| SRR5856938 | leaf | salt | 0.87 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 9.22 | MC |
| SRR6168973 | leaf | none (control) | 1.86 | MC |
| SRR6168974 | leaf | none (control) | 2.30 | MC |
| SRR6168975 | leaf | none (control) | 1.81 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 3.23 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.69 | MC |
| SRR6168979 | leaf | none (control) | 1.95 | MC |
| SRR6168980 | leaf | none (control) | 1.08 | MC |
| SRR6168981 | leaf | none (control) | 1.94 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 2.12 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.50 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.28 | MC |
| SRR8582888 | panicle | AM | 2.86 | MC |
| SRR8582889 | panicle | AM | 0.51 | MC |
| SRR8582890 | panicle | AM | 2.38 | MC |
| SRR8582891 | panicle | PM | 3.65 | MC |
| SRR8582892 | panicle | PM | 4.85 | MC |
| SRR8582893 | panicle | PM | 1.93 | MC |
| SRR5110430 | panicle | Dawn | 5.68 | MC |
| SRR4947496 | root | control | 3.12 | MC |
| SRR5110438 | panicle | Dawn + 7h | 3.78 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 4.35 | MC |
| SRR5110445 | panicle | Dusk | 2.27 | MC |
| SRR5110446 | panicle | Dusk | 4.20 | MC |
| SRR5110449 | panicle | Dawn + 14h | 6.02 | MC |
| SRR5110450 | panicle | Dawn + 14h | 3.16 | MC |
| SRR5110457 | panicle | Dawn + 21h | 2.44 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.10 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 3.16 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 4.24 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 3.82 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 4.65 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 5.78 | MC |
| SRR5126148 | root | "mock,1_day" | 3.50 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.43 | MC |
| SRR5126153 | root | "mock,7_days" | 2.10 | MC |
| SRR5126155 | root | "mock,7_days" | 4.19 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 3.00 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 3.46 | MC |
| SRR5126167 | root | "mock,14_days" | 2.02 | MC |
| SRR5126169 | root | "mock,14_days" | 2.98 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 4.99 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 3.80 | MC |
| SRR1213694 | root | wt | 3.07 | MC |
| SRR1213695 | root | wt | 2.59 | MC |
| SRR4947479 | root | control | 1.88 | MC |
| SRR4947480 | root | control | 0.89 | MC |
| SRR4947482 | root | Al | 3.58 | MC |
| SRR4947484 | root | Al | 2.97 | MC |
| SRR4947485 | root | Al | 2.56 | MC |
| SRR4947487 | root | control | 1.93 | MC |
| SRR4947488 | root | control | 4.05 | MC |
| SRR4947489 | root | control | 1.96 | MC |
| SRR4947492 | root | Al | 3.11 | MC |
| SRR4947493 | root | Al | 1.16 | MC |
| SRR4947494 | root | control | 2.15 | MC |
| SRR4947498 | root | Al | 3.24 | MC |
| SRR4947499 | root | Al | 4.00 | MC |
| SRR4947500 | root | Al | 2.92 | MC |
| SRR4947501 | root | Al | 2.52 | MC |
| SRR4947502 | root | control | 1.61 | MC |
| SRR4947503 | root | control | 3.02 | MC |
| SRR4947505 | root | control | 2.07 | MC |
| SRR4947506 | root | Al | 1.99 | MC |
| SRR4947507 | root | Al | 5.52 | MC |
| SRR4947508 | root | Al | 3.14 | MC |
| SRR6502104 | root | 100 mM NaCl | 5.03 | MC |
| SRR6502105 | root | 100 mM NaCl | 4.06 | MC |
| SRR6502108 | root | control | 3.88 | MC |
| SRR1740436 | root_differentiation_zone | wt | 2.63 | MC |
| SRR6441554 | seedling | wild_type | 0.69 | MC |
| SRR6441555 | seedling | wild_type | 1.88 | MC |
| SRR2154082 | seedling | wt | 3.39 | MC |
| SRR2154085 | seedling | wt | 3.45 | MC |
| SRR2154087 | seedling | wt | 3.05 | MC |
| SRR3098743 | seedling | wt | 1.46 | MC |
| SRR2857719 | seedling | drought_stress_0h | 2.86 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.56 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.75 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.54 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 2.41 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.71 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.34 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.37 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.79 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.30 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.19 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.60 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 3.32 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.92 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 6.92 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 0.75 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.84 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.27 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 3.82 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 2.96 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 3.03 | MC |