| SRR4457251 | 2nd_leaf | DAH4 | 0.35 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.45 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.63 | MC |
| SRR3745126 | anther | wt | 3.51 | MC |
| SRR358797 | callus | wt | 3.57 | MC |
| SRR6320473 | carpel | wt | 3.77 | MC |
| SRR6320498 | carpel | wt | 4.31 | MC |
| SRR5560727 | caryopsis | wild_type | 0.50 | MC |
| SRR5560728 | caryopsis | wild_type | 0.99 | MC |
| SRR5560729 | caryopsis | wild_type | 1.19 | MC |
| SRR7265400 | coleoptile | 2dA | 0.39 | MC |
| SRR7265401 | coleoptile | 2dA | 0.63 | MC |
| SRR7265402 | coleoptile | 2dA | 0.44 | MC |
| SRR7265403 | coleoptile | 2dN | 1.21 | MC |
| SRR7265404 | coleoptile | 2dN | 0.49 | MC |
| SRR7265405 | coleoptile | 2dN | 0.81 | MC |
| SRR7265406 | coleoptile | 3dA | 0.97 | MC |
| SRR7265407 | coleoptile | 3dA | 0.26 | MC |
| SRR7265410 | coleoptile | 3dN | 0.39 | MC |
| SRR7265411 | coleoptile | 3dN | 0.73 | MC |
| SRR7265415 | coleoptile | 4dN | 1.06 | MC |
| SRR7265416 | coleoptile | 4dN | 0.79 | MC |
| SRR7265417 | coleoptile | 4dN | 1.08 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.86 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 2.03 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.32 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 3.62 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.40 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 2.11 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 2.17 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.17 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.68 | MC |
| SRR7265378 | embryo | 1hA | 0.49 | MC |
| SRR7265380 | embryo | 1hN | 1.15 | MC |
| SRR7265381 | embryo | 1hN | 0.67 | MC |
| SRR7265386 | embryo | 3hN | 0.57 | MC |
| SRR7265388 | embryo | 12hA | 0.98 | MC |
| SRR7265389 | embryo | 12hA | 2.03 | MC |
| SRR7265390 | embryo | 12hA | 2.55 | MC |
| SRR7265391 | embryo | 12hN | 1.32 | MC |
| SRR7265392 | embryo | 12hN | 0.99 | MC |
| SRR7265393 | embryo | 12hN | 0.97 | MC |
| SRR7265394 | embryo | 24hA | 1.02 | MC |
| SRR7265396 | embryo | 24hA | 2.40 | MC |
| SRR7265397 | embryo | 24hN | 1.54 | MC |
| SRR7265398 | embryo | 24hN | 1.03 | MC |
| SRR7265399 | embryo | 24hN | 0.59 | MC |
| SRR2338868 | endosprem | high_temperature | 0.62 | MC |
| SRR2338869 | endosprem | high_temperature | 1.84 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.31 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.27 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.32 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.12 | MC |
| SRR1213691 | flower | wt | 1.54 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.46 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.61 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.37 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.25 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.52 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.14 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.53 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.62 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.70 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.12 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.06 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.06 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.65 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 1.70 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.97 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.39 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.35 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.80 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.78 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.32 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.39 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.32 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.85 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.11 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.94 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.63 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.72 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.47 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.50 | MC |
| SRR6417967 | leaf | H2O_control | 0.90 | MC |
| SRR6417969 | leaf | H2O_control | 0.82 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.24 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.42 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.47 | MC |
| SRR1213692 | leaf | wt | 0.92 | MC |
| SRR1213693 | leaf | wt | 0.43 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.94 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.79 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.33 | MC |
| SRR5856927 | leaf | control | 0.33 | MC |
| SRR5856928 | leaf | control | 0.80 | MC |
| SRR5856929 | leaf | control | 0.53 | MC |
| SRR5856930 | leaf | salt | 0.44 | MC |
| SRR5856932 | leaf | salt | 0.32 | MC |
| SRR5856933 | leaf | control | 0.89 | MC |
| SRR5856934 | leaf | control | 0.54 | MC |
| SRR5856935 | leaf | control | 0.59 | MC |
| SRR5856936 | leaf | salt | 0.73 | MC |
| SRR5856937 | leaf | salt | 0.22 | MC |
| SRR5856938 | leaf | salt | 0.81 | MC |
| SRR8582888 | panicle | AM | 1.45 | MC |
| SRR8582889 | panicle | AM | 0.63 | MC |
| SRR8582892 | panicle | PM | 1.87 | MC |
| SRR8582893 | panicle | PM | 0.32 | MC |
| SRR5110429 | panicle | Dawn | 3.67 | MC |
| SRR5110430 | panicle | Dawn | 1.63 | MC |
| SRR5110431 | panicle | Dawn | 3.02 | MC |
| SRR5110432 | panicle | Dawn | 3.29 | MC |
| SRR4947496 | root | control | 0.93 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.36 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.42 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.73 | MC |
| SRR5110437 | panicle | Dawn + 7h | 2.52 | MC |
| SRR5110438 | panicle | Dawn + 7h | 2.80 | MC |
| SRR5110440 | panicle | Dawn + 7h | 5.43 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 2.13 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.50 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 3.83 | MC |
| SRR5110445 | panicle | Dusk | 3.88 | MC |
| SRR5110446 | panicle | Dusk | 3.42 | MC |
| SRR5110448 | panicle | Dusk | 4.19 | MC |
| SRR5110449 | panicle | Dawn + 14h | 0.96 | MC |
| SRR5110450 | panicle | Dawn + 14h | 2.32 | MC |
| SRR5110451 | panicle | Dawn + 14h | 2.43 | MC |
| SRR5110452 | panicle | Dawn + 14h | 2.79 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 2.77 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.16 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 3.52 | MC |
| SRR5110457 | panicle | Dawn + 21h | 2.59 | MC |
| SRR5110458 | panicle | Dawn + 21h | 2.79 | MC |
| SRR5110459 | panicle | Dawn + 21h | 4.12 | MC |
| SRR5110460 | panicle | Dawn + 21h | 2.31 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.48 | MC |
| SRR1633182 | panicle | WT | 0.79 | MC |
| SRR1633185 | panicle | WT | 1.46 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.84 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 2.56 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.37 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 2.44 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 2.59 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.15 | MC |
| SRR5126147 | root | "mock,1_day" | 0.71 | MC |
| SRR5126148 | root | "mock,1_day" | 0.48 | MC |
| SRR5126149 | root | "mock,1_day" | 1.22 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.96 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.94 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.50 | MC |
| SRR5126153 | root | "mock,7_days" | 0.67 | MC |
| SRR5126157 | root | "mock,7_days" | 0.78 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.72 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.18 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.44 | MC |
| SRR5126165 | root | "mock,14_days" | 0.40 | MC |
| SRR5126167 | root | "mock,14_days" | 0.60 | MC |
| SRR5126169 | root | "mock,14_days" | 0.83 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.67 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.89 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.98 | MC |
| SRR1213694 | root | wt | 0.70 | MC |
| SRR1213695 | root | wt | 0.28 | MC |
| SRR4947478 | root | control | 1.60 | MC |
| SRR4947479 | root | control | 1.85 | MC |
| SRR4947480 | root | control | 1.98 | MC |
| SRR4947481 | root | control | 1.09 | MC |
| SRR4947482 | root | Al | 3.06 | MC |
| SRR4947483 | root | Al | 1.31 | MC |
| SRR4947484 | root | Al | 2.50 | MC |
| SRR4947485 | root | Al | 2.59 | MC |
| SRR4947488 | root | control | 2.37 | MC |
| SRR4947489 | root | control | 2.10 | MC |
| SRR4947490 | root | Al | 1.67 | MC |
| SRR4947491 | root | Al | 1.36 | MC |
| SRR4947492 | root | Al | 3.22 | MC |
| SRR4947493 | root | Al | 2.52 | MC |
| SRR4947494 | root | control | 3.56 | MC |
| SRR4947497 | root | control | 2.40 | MC |
| SRR4947501 | root | Al | 3.21 | MC |
| SRR4947502 | root | control | 4.74 | MC |
| SRR4947503 | root | control | 2.11 | MC |
| SRR4947504 | root | control | 3.21 | MC |
| SRR4947506 | root | Al | 1.96 | MC |
| SRR4947507 | root | Al | 2.04 | MC |
| SRR4947508 | root | Al | 1.26 | MC |
| SRR4947509 | root | Al | 2.40 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.75 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.22 | MC |
| SRR6502103 | root | 100 mM NaCl | 2.09 | MC |
| SRR6502104 | root | 100 mM NaCl | 3.36 | MC |
| SRR6502105 | root | 100 mM NaCl | 3.69 | MC |
| SRR6502107 | root | control | 2.65 | MC |
| SRR6502108 | root | control | 1.15 | MC |
| SRR2154086 | seedling | wt | 0.62 | MC |
| SRR2154082 | seedling | wt | 1.30 | MC |
| SRR2154083 | seedling | wt | 1.55 | MC |
| SRR2154084 | seedling | wt | 2.00 | MC |
| SRR2154087 | seedling | wt | 0.34 | MC |
| SRR3098742 | seedling | wt | 0.18 | MC |
| SRR3098743 | seedling | wt | 0.16 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.50 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.08 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 7.00 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.01 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.16 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.73 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.64 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.38 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.47 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.83 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.36 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.51 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.50 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.44 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.47 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.38 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.38 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.21 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.19 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.00 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.59 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.97 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.26 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.08 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 2.80 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.77 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 3.32 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 2.54 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.45 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 2.42 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 3.35 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 2.48 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.16 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.40 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.55 | MC |