| SRR4457254 | 2nd_leaf | DAH12 | 0.77 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.62 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 1.78 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.41 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 0.68 | MC |
| SRR5560727 | caryopsis | wild_type | 1.03 | MC |
| SRR5560729 | caryopsis | wild_type | 2.33 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.80 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.98 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.43 | MC |
| SRR7265406 | coleoptile | 3dA | 2.15 | MC |
| SRR7265407 | coleoptile | 3dA | 2.09 | MC |
| SRR7265408 | coleoptile | 3dA | 1.46 | MC |
| SRR7265409 | coleoptile | 3dN | 3.54 | MC |
| SRR7265410 | coleoptile | 3dN | 1.97 | MC |
| SRR7265411 | coleoptile | 3dN | 3.33 | MC |
| SRR7265413 | coleoptile | 4dA | 2.31 | MC |
| SRR7265414 | coleoptile | 4dA | 2.04 | MC |
| SRR7265415 | coleoptile | 4dN | 2.57 | MC |
| SRR7265416 | coleoptile | 4dN | 2.15 | MC |
| SRR7265417 | coleoptile | 4dN | 2.82 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 3.47 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 3.64 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.87 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.93 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 2.63 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.79 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.92 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 2.38 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 3.33 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 4.12 | MC |
| SRR7265373 | embryo | dry seed 0 h | 2.96 | MC |
| SRR7265374 | embryo | dry seed 0 h | 2.39 | MC |
| SRR7265376 | embryo | 1hA | 1.61 | MC |
| SRR7265377 | embryo | 1hA | 1.11 | MC |
| SRR7265378 | embryo | 1hA | 2.43 | MC |
| SRR7265379 | embryo | 1hN | 2.21 | MC |
| SRR7265380 | embryo | 1hN | 2.86 | MC |
| SRR7265381 | embryo | 1hN | 2.02 | MC |
| SRR7265382 | embryo | 3hA | 1.94 | MC |
| SRR7265383 | embryo | 3hA | 3.44 | MC |
| SRR7265384 | embryo | 3hA | 2.91 | MC |
| SRR7265386 | embryo | 3hN | 0.96 | MC |
| SRR7265387 | embryo | 3hN | 2.11 | MC |
| SRR7265392 | embryo | 12hN | 4.31 | MC |
| SRR2338866 | endosprem | control | 3.64 | MC |
| SRR2338868 | endosprem | high_temperature | 1.61 | MC |
| SRR2338869 | endosprem | high_temperature | 0.99 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.49 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.50 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.78 | MC |
| SRR4457240 | flag_leaf | DAH28 | 2.54 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.67 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.79 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.88 | MC |
| SRR8060836 | leaf | wild_type | 0.71 | MC |
| SRR8060837 | leaf | wild_type | 0.62 | MC |
| SRR8240824 | leaf | wild_type | 0.30 | MC |
| SRR8240826 | leaf | wild_type | 0.28 | MC |
| SRR8240818 | leaf | wild_type | 0.55 | MC |
| SRR8240820 | leaf | wild_type | 0.34 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 2.38 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.74 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 3.60 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.80 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.70 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.36 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.84 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.63 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.41 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.64 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.23 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.22 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 2.04 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 3.37 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.78 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.01 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.45 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.72 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.65 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.69 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.72 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.45 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.75 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.78 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.38 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 3.06 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 4.34 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 4.69 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 3.06 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 4.34 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 4.69 | MC |
| SRR1761529 | leaf | drought | 3.06 | MC |
| SRR1761530 | leaf | control | 4.34 | MC |
| SRR1761531 | leaf | control | 4.69 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.08 | MC |
| SRR6417968 | leaf | H2O_control | 0.42 | MC |
| SRR6417969 | leaf | H2O_control | 0.56 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.44 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.51 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 3.32 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 2.56 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.95 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 1.29 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.99 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.84 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 2.01 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.95 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.84 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.91 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.46 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.48 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.17 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 3.14 | MC |
| SRR1213692 | leaf | wt | 0.91 | MC |
| SRR1213693 | leaf | wt | 0.70 | MC |
| SRR6502100 | leaf | control | 0.32 | MC |
| SRR5856927 | leaf | control | 0.44 | MC |
| SRR5856928 | leaf | control | 2.26 | MC |
| SRR5856932 | leaf | salt | 0.75 | MC |
| SRR5856934 | leaf | control | 1.24 | MC |
| SRR5856936 | leaf | salt | 1.28 | MC |
| SRR5856937 | leaf | salt | 1.10 | MC |
| SRR5856938 | leaf | salt | 1.01 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 2.52 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 3.78 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 4.52 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 5.35 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 4.09 | MC |
| SRR6168975 | leaf | none (control) | 2.04 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 4.20 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.77 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.52 | MC |
| SRR6168980 | leaf | none (control) | 0.19 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.25 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.62 | MC |
| SRR8582892 | panicle | PM | 2.68 | MC |
| SRR8582893 | panicle | PM | 0.40 | MC |
| SRR5110430 | panicle | Dawn | 2.16 | MC |
| SRR5110439 | panicle | Dawn + 7h | 3.59 | MC |
| SRR5110450 | panicle | Dawn + 14h | 4.39 | MC |
| SRR5110460 | panicle | Dawn + 21h | 4.54 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.27 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.80 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.01 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.73 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 3.37 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 2.26 | MC |
| SRR5126155 | root | "mock,7_days" | 2.92 | MC |
| SRR5126157 | root | "mock,7_days" | 1.81 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 3.21 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.50 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 4.11 | MC |
| SRR5126165 | root | "mock,14_days" | 2.77 | MC |
| SRR5126167 | root | "mock,14_days" | 2.72 | MC |
| SRR5126169 | root | "mock,14_days" | 4.37 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 4.84 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.09 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.86 | MC |
| SRR1213694 | root | wt | 2.81 | MC |
| SRR1213695 | root | wt | 0.67 | MC |
| SRR4947489 | root | control | 3.89 | MC |
| SRR4947507 | root | Al | 4.97 | MC |
| SRR6502092 | root | 100 mM NaCl | 4.10 | MC |
| SRR6502093 | root | 100 mM NaCl | 5.06 | MC |
| SRR6502095 | root | control | 3.31 | MC |
| SRR6502096 | root | control | 0.38 | MC |
| SRR6502103 | root | 100 mM NaCl | 4.56 | MC |
| SRR6502106 | root | control | 1.41 | MC |
| SRR1740434 | root_differentiation_zone | wt | 2.56 | MC |
| SRR6441554 | seedling | wild_type | 0.74 | MC |
| SRR6441555 | seedling | wild_type | 2.67 | MC |
| SRR2154087 | seedling | wt | 2.14 | MC |
| SRR3098742 | seedling | wt | 0.37 | MC |
| SRR3098743 | seedling | wt | 0.26 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.61 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.52 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.68 | MC |
| SRR358793 | seedling | wt | 0.88 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.98 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.09 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.45 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.45 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.66 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.28 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.72 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 1.23 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.95 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 1.46 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.49 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.10 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.51 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.67 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.49 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.20 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.06 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.39 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.60 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.84 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.49 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.51 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.67 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.78 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 2.64 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 6.26 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 3.00 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 2.46 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 3.13 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.43 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 2.99 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 2.84 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 3.35 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 2.47 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.40 | MC |