| SRR4457251 | 2nd_leaf | DAH4 | 0.31 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.67 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.88 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.72 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.13 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.79 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.01 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.91 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 1.39 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.00 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.55 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 0.97 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.96 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.62 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 2.45 | MC |
| SRR3745125 | anther | wt | 3.25 | MC |
| SRR3745126 | anther | wt | 3.23 | MC |
| SRR3745127 | anther | wt | 3.71 | MC |
| SRR358796 | callus | wt | 8.87 | MC |
| SRR5560727 | caryopsis | wild_type | 3.55 | MC |
| SRR5560728 | caryopsis | wild_type | 3.84 | MC |
| SRR5560729 | caryopsis | wild_type | 4.52 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 2.18 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.00 | MC |
| SRR4947495 | root | control | 1.63 | MC |
| SRR7265400 | coleoptile | 2dA | 1.53 | MC |
| SRR7265401 | coleoptile | 2dA | 2.61 | MC |
| SRR7265402 | coleoptile | 2dA | 1.83 | MC |
| SRR7265403 | coleoptile | 2dN | 2.83 | MC |
| SRR7265404 | coleoptile | 2dN | 2.83 | MC |
| SRR7265405 | coleoptile | 2dN | 2.28 | MC |
| SRR7265409 | coleoptile | 3dN | 0.70 | MC |
| SRR7265410 | coleoptile | 3dN | 0.37 | MC |
| SRR7265411 | coleoptile | 3dN | 0.61 | MC |
| SRR7265412 | coleoptile | 4dA | 2.58 | MC |
| SRR7265413 | coleoptile | 4dA | 3.45 | MC |
| SRR7265414 | coleoptile | 4dA | 2.02 | MC |
| SRR7265415 | coleoptile | 4dN | 0.99 | MC |
| SRR7265416 | coleoptile | 4dN | 0.95 | MC |
| SRR7265417 | coleoptile | 4dN | 0.89 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 2.46 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 2.17 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.96 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.33 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.51 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.55 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.39 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.42 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.38 | MC |
| SRR7265394 | embryo | 24hA | 1.19 | MC |
| SRR7265395 | embryo | 24hA | 2.92 | MC |
| SRR7265396 | embryo | 24hA | 2.18 | MC |
| SRR7265397 | embryo | 24hN | 4.16 | MC |
| SRR7265398 | embryo | 24hN | 3.26 | MC |
| SRR7265399 | embryo | 24hN | 1.53 | MC |
| SRR2338866 | endosprem | control | 1.72 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.23 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.25 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.83 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.01 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.29 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.93 | MC |
| SRR4457238 | flag_leaf | DAH20 | 1.25 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.92 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.54 | MC |
| SRR4457242 | flag_leaf | DAH28 | 1.19 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.15 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.70 | MC |
| SRR4457245 | flag_leaf | DAH36 | 2.19 | MC |
| SRR4457246 | flag_leaf | DAH44 | 2.28 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.00 | MC |
| SRR4457248 | flag_leaf | DAH44 | 2.55 | MC |
| SRR8240825 | leaf | wild_type | 1.70 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 3.30 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.52 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 7.73 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 3.46 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.54 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.67 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.91 | MC |
| SRR6417967 | leaf | H2O_control | 0.79 | MC |
| SRR6417968 | leaf | H2O_control | 1.25 | MC |
| SRR6417969 | leaf | H2O_control | 1.11 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 2.50 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 4.31 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 2.70 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 3.68 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 3.64 | MC |
| SRR5856930 | leaf | salt | 1.84 | MC |
| SRR5856932 | leaf | salt | 1.20 | MC |
| SRR8582888 | panicle | AM | 0.79 | MC |
| SRR8582889 | panicle | AM | 0.30 | MC |
| SRR8582890 | panicle | AM | 0.66 | MC |
| SRR5110429 | panicle | Dawn | 1.53 | MC |
| SRR5110430 | panicle | Dawn | 0.88 | MC |
| SRR5110431 | panicle | Dawn | 1.13 | MC |
| SRR5110432 | panicle | Dawn | 1.35 | MC |
| SRR4947496 | root | control | 1.77 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 2.09 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 3.10 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 2.39 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 1.96 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.45 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 2.48 | MC |
| SRR5110445 | panicle | Dusk | 4.44 | MC |
| SRR5110449 | panicle | Dawn + 14h | 2.80 | MC |
| SRR5110450 | panicle | Dawn + 14h | 2.66 | MC |
| SRR5110451 | panicle | Dawn + 14h | 2.00 | MC |
| SRR5110452 | panicle | Dawn + 14h | 2.80 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 2.35 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 2.02 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.93 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 2.70 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.65 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.03 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.87 | MC |
| SRR5126147 | root | "mock,1_day" | 1.22 | MC |
| SRR5126148 | root | "mock,1_day" | 1.11 | MC |
| SRR5126149 | root | "mock,1_day" | 2.28 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.67 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.74 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.21 | MC |
| SRR5126153 | root | "mock,7_days" | 0.64 | MC |
| SRR5126157 | root | "mock,7_days" | 1.59 | MC |
| SRR5126165 | root | "mock,14_days" | 2.64 | MC |
| SRR5126169 | root | "mock,14_days" | 2.69 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 3.62 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 2.18 | MC |
| SRR4947478 | root | control | 1.43 | MC |
| SRR4947479 | root | control | 1.09 | MC |
| SRR4947480 | root | control | 3.36 | MC |
| SRR4947481 | root | control | 4.06 | MC |
| SRR4947483 | root | Al | 2.43 | MC |
| SRR4947484 | root | Al | 3.05 | MC |
| SRR4947487 | root | control | 1.98 | MC |
| SRR4947489 | root | control | 1.33 | MC |
| SRR4947490 | root | Al | 3.09 | MC |
| SRR4947491 | root | Al | 2.32 | MC |
| SRR4947492 | root | Al | 1.64 | MC |
| SRR4947493 | root | Al | 1.69 | MC |
| SRR4947494 | root | control | 1.23 | MC |
| SRR4947497 | root | control | 2.20 | MC |
| SRR4947498 | root | Al | 2.82 | MC |
| SRR4947499 | root | Al | 2.05 | MC |
| SRR4947500 | root | Al | 4.05 | MC |
| SRR4947501 | root | Al | 4.04 | MC |
| SRR4947502 | root | control | 2.81 | MC |
| SRR4947503 | root | control | 3.92 | MC |
| SRR4947504 | root | control | 2.54 | MC |
| SRR4947505 | root | control | 3.00 | MC |
| SRR4947506 | root | Al | 2.84 | MC |
| SRR4947507 | root | Al | 3.43 | MC |
| SRR4947508 | root | Al | 3.95 | MC |
| SRR4947509 | root | Al | 3.98 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.35 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.76 | MC |
| SRR6502093 | root | 100 mM NaCl | 2.05 | MC |
| SRR6502094 | root | control | 2.46 | MC |
| SRR6502095 | root | control | 1.48 | MC |
| SRR6502096 | root | control | 1.47 | MC |
| SRR6502103 | root | 100 mM NaCl | 2.05 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.83 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.98 | MC |
| SRR6502107 | root | control | 3.84 | MC |
| SRR6502108 | root | control | 1.26 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.75 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.14 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.44 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.98 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.50 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.69 | MC |
| SRR3098741 | seedling | wt | 1.10 | MC |
| SRR3098742 | seedling | wt | 1.20 | MC |
| SRR3098743 | seedling | wt | 0.97 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.35 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 9.57 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.73 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.21 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.75 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.40 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.91 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.41 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 3.22 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.59 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.86 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.55 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 2.93 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 7.33 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 5.89 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 3.17 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 3.23 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.59 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 2.76 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 2.92 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.73 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 2.00 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.70 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 1.72 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.96 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 3.58 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 3.67 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 3.54 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 5.95 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 5.54 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 4.84 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 9.40 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 3.71 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 5.04 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 4.56 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 7.47 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 6.42 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 6.26 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 3.37 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 2.36 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 3.02 | MC |