| SRR4457250 | 2nd_leaf | DAH4 | 1.25 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.62 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.71 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.46 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.85 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.46 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.83 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.97 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.94 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.49 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.79 | MC |
| SRR5560727 | caryopsis | wild_type | 0.81 | MC |
| SRR5560728 | caryopsis | wild_type | 2.94 | MC |
| SRR5560729 | caryopsis | wild_type | 2.22 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.21 | MC |
| SRR4947495 | root | control | 2.60 | MC |
| SRR7265400 | coleoptile | 2dA | 1.26 | MC |
| SRR7265401 | coleoptile | 2dA | 2.56 | MC |
| SRR7265403 | coleoptile | 2dN | 2.16 | MC |
| SRR7265405 | coleoptile | 2dN | 1.99 | MC |
| SRR7265406 | coleoptile | 3dA | 1.60 | MC |
| SRR7265413 | coleoptile | 4dA | 3.58 | MC |
| SRR7265414 | coleoptile | 4dA | 1.86 | MC |
| SRR7265417 | coleoptile | 4dN | 1.58 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 3.12 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 2.88 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 3.73 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.88 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.04 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.96 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 2.85 | MC |
| SRR7265373 | embryo | dry seed 0 h | 2.59 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.70 | MC |
| SRR7265376 | embryo | 1hA | 1.00 | MC |
| SRR7265377 | embryo | 1hA | 1.65 | MC |
| SRR7265378 | embryo | 1hA | 1.73 | MC |
| SRR7265379 | embryo | 1hN | 0.89 | MC |
| SRR7265381 | embryo | 1hN | 2.59 | MC |
| SRR7265382 | embryo | 3hA | 1.64 | MC |
| SRR7265383 | embryo | 3hA | 1.87 | MC |
| SRR7265384 | embryo | 3hA | 1.84 | MC |
| SRR7265386 | embryo | 3hN | 2.05 | MC |
| SRR7265387 | embryo | 3hN | 1.39 | MC |
| SRR7265393 | embryo | 12hN | 1.90 | MC |
| SRR7265394 | embryo | 24hA | 1.30 | MC |
| SRR7265397 | embryo | 24hN | 3.73 | MC |
| SRR7265398 | embryo | 24hN | 2.65 | MC |
| SRR7265399 | embryo | 24hN | 0.94 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.55 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.33 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.63 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.31 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.17 | MC |
| SRR4457242 | flag_leaf | DAH28 | 1.48 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.51 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.58 | MC |
| SRR4457245 | flag_leaf | DAH36 | 3.88 | MC |
| SRR4457246 | flag_leaf | DAH44 | 3.62 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.80 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.02 | MC |
| SRR1213691 | flower | wt | 2.10 | MC |
| SRR8240826 | leaf | wild_type | 0.90 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.49 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.45 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.14 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.12 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.70 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.40 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.29 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.83 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.56 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.51 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.16 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.52 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.21 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.26 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.85 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.58 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.79 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.86 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.46 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.92 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.89 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.89 | MC |
| SRR1761529 | leaf | drought | 0.89 | MC |
| SRR504365 | leaf | wt | 0.86 | MC |
| SRR6417967 | leaf | H2O_control | 1.20 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 2.79 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 2.95 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.24 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 3.55 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.19 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.54 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.76 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.92 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.47 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.43 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.13 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.78 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.97 | MC |
| SRR1213692 | leaf | wt | 0.70 | MC |
| SRR1213693 | leaf | wt | 0.43 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 2.05 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.03 | MC |
| SRR6502088 | leaf | control | 3.09 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.47 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.55 | MC |
| SRR6502100 | leaf | control | 1.43 | MC |
| SRR6502101 | leaf | control | 1.35 | MC |
| SRR5856927 | leaf | control | 0.19 | MC |
| SRR5856928 | leaf | control | 0.24 | MC |
| SRR5856929 | leaf | control | 0.93 | MC |
| SRR5856935 | leaf | control | 1.63 | MC |
| SRR5856937 | leaf | salt | 0.81 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 2.69 | MC |
| SRR6168973 | leaf | none (control) | 0.67 | MC |
| SRR6168974 | leaf | none (control) | 2.49 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.90 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.59 | MC |
| SRR6168981 | leaf | none (control) | 0.47 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 2.01 | MC |
| SRR8582888 | panicle | AM | 0.34 | MC |
| SRR8582889 | panicle | AM | 1.21 | MC |
| SRR8582890 | panicle | AM | 0.85 | MC |
| SRR8582892 | panicle | PM | 0.66 | MC |
| SRR8582893 | panicle | PM | 4.05 | MC |
| SRR5110429 | panicle | Dawn | 2.73 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.69 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 3.15 | MC |
| SRR5110439 | panicle | Dawn + 7h | 3.11 | MC |
| SRR5110440 | panicle | Dawn + 7h | 3.42 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.23 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.68 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.72 | MC |
| SRR5110445 | panicle | Dusk | 1.34 | MC |
| SRR5110446 | panicle | Dusk | 1.60 | MC |
| SRR5110447 | panicle | Dusk | 1.49 | MC |
| SRR5110451 | panicle | Dawn + 14h | 2.25 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.56 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 2.70 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 2.33 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.34 | MC |
| SRR5110458 | panicle | Dawn + 21h | 3.50 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.64 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.65 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.22 | MC |
| SRR1633185 | panicle | WT | 1.86 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 3.11 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.71 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 2.90 | MC |
| SRR5126147 | root | "mock,1_day" | 0.41 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.67 | MC |
| SRR5126153 | root | "mock,7_days" | 2.33 | MC |
| SRR5126155 | root | "mock,7_days" | 3.22 | MC |
| SRR5126157 | root | "mock,7_days" | 5.11 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.20 | MC |
| SRR5126165 | root | "mock,14_days" | 0.35 | MC |
| SRR5126169 | root | "mock,14_days" | 4.23 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.90 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.95 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.97 | MC |
| SRR1213694 | root | wt | 1.22 | MC |
| SRR1213695 | root | wt | 2.62 | MC |
| SRR4947484 | root | Al | 2.27 | MC |
| SRR4947485 | root | Al | 2.49 | MC |
| SRR4947487 | root | control | 0.52 | MC |
| SRR4947488 | root | control | 0.96 | MC |
| SRR4947489 | root | control | 0.78 | MC |
| SRR4947490 | root | Al | 2.22 | MC |
| SRR4947491 | root | Al | 1.55 | MC |
| SRR4947492 | root | Al | 0.92 | MC |
| SRR4947493 | root | Al | 1.15 | MC |
| SRR4947494 | root | control | 1.69 | MC |
| SRR4947498 | root | Al | 2.38 | MC |
| SRR4947500 | root | Al | 1.07 | MC |
| SRR4947501 | root | Al | 1.18 | MC |
| SRR4947504 | root | control | 1.40 | MC |
| SRR4947505 | root | control | 1.30 | MC |
| SRR4947507 | root | Al | 1.62 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.98 | MC |
| SRR6502092 | root | 100 mM NaCl | 2.45 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.93 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.12 | MC |
| SRR6502106 | root | control | 1.80 | MC |
| SRR6502108 | root | control | 0.56 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.72 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.59 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.55 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.46 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.29 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.75 | MC |
| SRR6441555 | seedling | wild_type | 2.29 | MC |
| SRR2154086 | seedling | wt | 0.64 | MC |
| SRR2154083 | seedling | wt | 0.50 | MC |
| SRR2154084 | seedling | wt | 3.63 | MC |
| SRR2154085 | seedling | wt | 1.71 | MC |
| SRR2154087 | seedling | wt | 0.48 | MC |
| SRR3098741 | seedling | wt | 2.69 | MC |
| SRR3098742 | seedling | wt | 1.92 | MC |
| SRR3098743 | seedling | wt | 1.14 | MC |
| SRR2857719 | seedling | drought_stress_0h | 3.50 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 1.85 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.55 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.87 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.34 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.55 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.74 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.49 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.49 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.58 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.16 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.92 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.13 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.67 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.01 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 1.40 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 0.99 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 2.06 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.34 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.63 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.12 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.66 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.96 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.83 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.69 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.02 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.92 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.58 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.63 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.52 | MC |