| SRR4457255 | 2nd_leaf | DAH20 | 0.60 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.74 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.51 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.42 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.38 | MC |
| SRR3745125 | anther | wt | 1.03 | MC |
| SRR3745127 | anther | wt | 0.87 | MC |
| SRR5560727 | caryopsis | wild_type | 0.57 | MC |
| SRR5560728 | caryopsis | wild_type | 0.37 | MC |
| SRR5560729 | caryopsis | wild_type | 0.93 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.69 | MC |
| SRR7265400 | coleoptile | 2dA | 0.48 | MC |
| SRR7265401 | coleoptile | 2dA | 0.41 | MC |
| SRR7265402 | coleoptile | 2dA | 0.41 | MC |
| SRR7265403 | coleoptile | 2dN | 0.35 | MC |
| SRR7265405 | coleoptile | 2dN | 0.70 | MC |
| SRR7265410 | coleoptile | 3dN | 0.75 | MC |
| SRR7265411 | coleoptile | 3dN | 0.52 | MC |
| SRR7265416 | coleoptile | 4dN | 0.68 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.59 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.53 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.55 | MC |
| SRR7265376 | embryo | 1hA | 0.40 | MC |
| SRR7265384 | embryo | 3hA | 0.53 | MC |
| SRR7265386 | embryo | 3hN | 0.45 | MC |
| SRR7265388 | embryo | 12hA | 0.64 | MC |
| SRR7265389 | embryo | 12hA | 0.52 | MC |
| SRR7265392 | embryo | 12hN | 0.41 | MC |
| SRR7265395 | embryo | 24hA | 0.56 | MC |
| SRR7265396 | embryo | 24hA | 0.70 | MC |
| SRR7265397 | embryo | 24hN | 0.59 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.70 | MC |
| SRR1213691 | flower | wt | 0.64 | MC |
| SRR8060836 | leaf | wild_type | 0.45 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.80 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.52 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.27 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.26 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.42 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 0.71 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.55 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.50 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.21 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.49 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.38 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.45 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.55 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.49 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.55 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.49 | MC |
| SRR1761529 | leaf | drought | 0.55 | MC |
| SRR1761530 | leaf | control | 0.49 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.43 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.69 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.59 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.41 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.42 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.26 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.56 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.46 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.23 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.50 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.51 | MC |
| SRR1213692 | leaf | wt | 0.29 | MC |
| SRR1213693 | leaf | wt | 0.90 | MC |
| SRR6168973 | leaf | none (control) | 0.38 | MC |
| SRR6168981 | leaf | none (control) | 0.96 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.23 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.63 | MC |
| SRR8582888 | panicle | AM | 0.33 | MC |
| SRR8582893 | panicle | PM | 0.39 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.26 | MC |
| SRR1633182 | panicle | WT | 0.40 | MC |
| SRR1633185 | panicle | WT | 2.33 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.78 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.99 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.79 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.61 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.85 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.47 | MC |
| SRR5126148 | root | "mock,1_day" | 0.48 | MC |
| SRR5126155 | root | "mock,7_days" | 0.29 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.38 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.39 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.39 | MC |
| SRR5126165 | root | "mock,14_days" | 0.35 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.84 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.62 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.59 | MC |
| SRR1213695 | root | wt | 0.74 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.46 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.81 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.64 | MC |
| SRR6502106 | root | control | 0.38 | MC |
| SRR6502107 | root | control | 0.43 | MC |
| SRR3098741 | seedling | wt | 0.22 | MC |
| SRR3098742 | seedling | wt | 0.27 | MC |
| SRR3098743 | seedling | wt | 0.27 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.43 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.31 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.59 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 8.55 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.88 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.29 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.86 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.63 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.36 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.26 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.29 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.26 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.46 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.31 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.36 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.54 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.37 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.34 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.40 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.38 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.74 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.80 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.69 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.96 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 0.53 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 1.01 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 0.55 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 0.79 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.58 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.58 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 0.83 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 0.78 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 0.76 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.15 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.75 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.59 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.43 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.73 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.79 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.03 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.22 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.09 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.10 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.31 | MC |