| SRR4457252 | 2nd_leaf | DAH12 | 0.33 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.68 | MC |
| SRR5560728 | caryopsis | wild_type | 4.24 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.63 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.01 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.24 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 3.42 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 3.89 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.55 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 3.60 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.46 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.50 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 3.50 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.19 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.79 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 2.48 | MC |
| SRR7265377 | embryo | 1hA | 0.62 | MC |
| SRR7265378 | embryo | 1hA | 1.02 | MC |
| SRR7265379 | embryo | 1hN | 0.49 | MC |
| SRR7265385 | embryo | 3hN | 0.77 | MC |
| SRR7265387 | embryo | 3hN | 0.64 | MC |
| SRR2338867 | endosprem | control | 1.01 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.23 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.20 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.80 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.83 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.62 | MC |
| SRR1213691 | flower | wt | 1.28 | MC |
| SRR8060835 | leaf | wild_type | 0.40 | MC |
| SRR8240825 | leaf | wild_type | 0.28 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.62 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.65 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.32 | MC |
| SRR6417967 | leaf | H2O_control | 0.77 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.81 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.38 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.93 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.70 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.40 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.11 | MC |
| SRR5856927 | leaf | control | 1.17 | MC |
| SRR5856928 | leaf | control | 0.66 | MC |
| SRR5856929 | leaf | control | 1.56 | MC |
| SRR5856930 | leaf | salt | 1.00 | MC |
| SRR5856931 | leaf | salt | 1.09 | MC |
| SRR5856932 | leaf | salt | 0.42 | MC |
| SRR5856933 | leaf | control | 0.56 | MC |
| SRR5856934 | leaf | control | 0.80 | MC |
| SRR5856936 | leaf | salt | 0.72 | MC |
| SRR5856938 | leaf | salt | 0.39 | MC |
| SRR6168973 | leaf | none (control) | 2.45 | MC |
| SRR6168974 | leaf | none (control) | 2.71 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.83 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.28 | MC |
| SRR8582893 | panicle | PM | 0.22 | MC |
| SRR5110431 | panicle | Dawn | 0.72 | MC |
| SRR5110432 | panicle | Dawn | 1.20 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.61 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.55 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.71 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.18 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 2.07 | MC |
| SRR5110446 | panicle | Dusk | 2.99 | MC |
| SRR5110447 | panicle | Dusk | 2.43 | MC |
| SRR5110448 | panicle | Dusk | 3.95 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.19 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.16 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.83 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.70 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.67 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 2.50 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.02 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.49 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.71 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.31 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.48 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.60 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 2.25 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.28 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 2.81 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 3.30 | MC |
| SRR5126147 | root | "mock,1_day" | 3.39 | MC |
| SRR5126149 | root | "mock,1_day" | 4.55 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.85 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.83 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.49 | MC |
| SRR5126153 | root | "mock,7_days" | 1.36 | MC |
| SRR5126155 | root | "mock,7_days" | 2.20 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.27 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.48 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.58 | MC |
| SRR5126165 | root | "mock,14_days" | 1.19 | MC |
| SRR5126167 | root | "mock,14_days" | 2.16 | MC |
| SRR5126169 | root | "mock,14_days" | 1.85 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.00 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.09 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.72 | MC |
| SRR1213694 | root | wt | 0.29 | MC |
| SRR4947480 | root | control | 2.28 | MC |
| SRR4947481 | root | control | 2.42 | MC |
| SRR4947482 | root | Al | 1.16 | MC |
| SRR4947484 | root | Al | 3.95 | MC |
| SRR4947485 | root | Al | 2.72 | MC |
| SRR4947488 | root | control | 2.52 | MC |
| SRR4947489 | root | control | 1.90 | MC |
| SRR4947490 | root | Al | 0.82 | MC |
| SRR4947492 | root | Al | 3.54 | MC |
| SRR4947493 | root | Al | 1.78 | MC |
| SRR4947497 | root | control | 4.19 | MC |
| SRR4947498 | root | Al | 2.21 | MC |
| SRR4947500 | root | Al | 2.70 | MC |
| SRR4947501 | root | Al | 1.42 | MC |
| SRR4947503 | root | control | 0.95 | MC |
| SRR4947504 | root | control | 1.65 | MC |
| SRR4947505 | root | control | 3.91 | MC |
| SRR4947508 | root | Al | 2.25 | MC |
| SRR4947509 | root | Al | 2.92 | MC |
| SRR6502091 | root | 100 mM NaCl | 3.11 | MC |
| SRR6502095 | root | control | 2.95 | MC |
| SRR6502096 | root | control | 3.82 | MC |
| SRR1740435 | root_differentiation_zone | wt | 2.54 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.72 | MC |
| SRR1740432 | root_elongation_zone | wt | 2.16 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.79 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.67 | MC |
| SRR6441554 | seedling | wild_type | 0.73 | MC |
| SRR6441555 | seedling | wild_type | 1.31 | MC |
| SRR2154085 | seedling | wt | 1.24 | MC |
| SRR3098741 | seedling | wt | 1.09 | MC |
| SRR3098742 | seedling | wt | 0.34 | MC |
| SRR3098743 | seedling | wt | 0.92 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.09 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.01 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.99 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.34 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.04 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.63 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.51 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.43 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.58 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.99 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.65 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.31 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.23 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.35 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.90 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.90 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.84 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.24 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.27 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.78 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.92 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 3.32 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 2.71 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 1.78 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.27 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 2.81 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 2.42 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.51 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.72 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 1.28 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.96 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 1.25 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 4.34 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 0.68 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 3.75 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.27 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 3.33 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 2.72 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 3.33 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 3.08 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.29 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 3.43 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 2.66 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 3.01 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.15 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.45 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.98 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.93 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.51 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.75 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.45 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.34 | MC |