| SRR4457249 | 2nd_leaf | DAH4 | 0.75 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.47 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.60 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.81 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.56 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.72 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.24 | MC |
| SRR358797 | callus | wt | 1.05 | MC |
| SRR5560727 | caryopsis | wild_type | 1.23 | MC |
| SRR5560728 | caryopsis | wild_type | 1.42 | MC |
| SRR5560729 | caryopsis | wild_type | 1.47 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.84 | MC |
| SRR4947495 | root | control | 0.62 | MC |
| SRR7265400 | coleoptile | 2dA | 0.36 | MC |
| SRR7265401 | coleoptile | 2dA | 0.34 | MC |
| SRR7265407 | coleoptile | 3dA | 0.23 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.40 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.94 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.58 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.87 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.90 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.43 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.70 | MC |
| SRR7265394 | embryo | 24hA | 0.54 | MC |
| SRR2338867 | endosprem | control | 0.52 | MC |
| SRR2338868 | endosprem | high_temperature | 0.42 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.64 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.69 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.28 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.67 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.45 | MC |
| SRR4457238 | flag_leaf | DAH20 | 1.16 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.67 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.31 | MC |
| SRR1213691 | flower | wt | 0.56 | MC |
| SRR8240824 | leaf | wild_type | 0.32 | MC |
| SRR8240826 | leaf | wild_type | 0.46 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.42 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.19 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.22 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.52 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.43 | MC |
| SRR504365 | leaf | wt | 0.65 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.67 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.63 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.74 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.27 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.32 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.74 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.41 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.25 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.33 | MC |
| SRR1213692 | leaf | wt | 0.44 | MC |
| SRR1213693 | leaf | wt | 1.11 | MC |
| SRR6502088 | leaf | control | 0.32 | MC |
| SRR6502090 | leaf | control | 0.40 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 4.66 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 1.62 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 2.38 | MC |
| SRR6168973 | leaf | none (control) | 0.65 | MC |
| SRR6168974 | leaf | none (control) | 2.00 | MC |
| SRR5110429 | panicle | Dawn | 2.43 | MC |
| SRR5110430 | panicle | Dawn | 2.00 | MC |
| SRR5110431 | panicle | Dawn | 2.33 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.70 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 2.37 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 3.41 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.67 | MC |
| SRR5110439 | panicle | Dawn + 7h | 4.22 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.98 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.43 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 2.04 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.95 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 2.04 | MC |
| SRR5110445 | panicle | Dusk | 1.88 | MC |
| SRR5110446 | panicle | Dusk | 2.96 | MC |
| SRR5110447 | panicle | Dusk | 1.23 | MC |
| SRR5110448 | panicle | Dusk | 2.15 | MC |
| SRR5110449 | panicle | Dawn + 14h | 5.25 | MC |
| SRR5110450 | panicle | Dawn + 14h | 2.11 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.57 | MC |
| SRR5110452 | panicle | Dawn + 14h | 4.68 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.76 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 3.59 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.12 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 2.54 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.15 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.64 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.89 | MC |
| SRR5110460 | panicle | Dawn + 21h | 4.70 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.43 | MC |
| SRR1633182 | panicle | WT | 1.10 | MC |
| SRR1633185 | panicle | WT | 2.31 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.44 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.86 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.09 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 2.97 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.77 | MC |
| SRR5126148 | root | "mock,1_day" | 0.44 | MC |
| SRR5126149 | root | "mock,1_day" | 0.67 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.64 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.58 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.02 | MC |
| SRR5126153 | root | "mock,7_days" | 0.44 | MC |
| SRR5126155 | root | "mock,7_days" | 1.60 | MC |
| SRR5126165 | root | "mock,14_days" | 0.70 | MC |
| SRR1213694 | root | wt | 0.56 | MC |
| SRR1213695 | root | wt | 0.46 | MC |
| SRR4947478 | root | control | 0.59 | MC |
| SRR4947479 | root | control | 1.01 | MC |
| SRR4947481 | root | control | 0.59 | MC |
| SRR4947482 | root | Al | 0.75 | MC |
| SRR4947485 | root | Al | 0.87 | MC |
| SRR4947490 | root | Al | 0.65 | MC |
| SRR4947491 | root | Al | 1.79 | MC |
| SRR4947494 | root | control | 0.49 | MC |
| SRR4947498 | root | Al | 2.84 | MC |
| SRR4947502 | root | control | 1.21 | MC |
| SRR4947503 | root | control | 1.01 | MC |
| SRR4947505 | root | control | 0.61 | MC |
| SRR4947506 | root | Al | 0.94 | MC |
| SRR4947507 | root | Al | 1.18 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.03 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.92 | MC |
| SRR6502094 | root | control | 0.49 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.46 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.78 | MC |
| SRR6502106 | root | control | 0.79 | MC |
| SRR6502108 | root | control | 0.53 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.30 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.47 | MC |
| SRR6441554 | seedling | wild_type | 0.87 | MC |
| SRR6441555 | seedling | wild_type | 0.46 | MC |
| SRR2154084 | seedling | wt | 0.87 | MC |
| SRR3098743 | seedling | wt | 0.16 | MC |
| SRR358792 | seedling | wt | 0.89 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.99 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.44 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.35 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.41 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.73 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.47 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.54 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.41 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.63 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 2.99 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 2.79 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 2.45 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 3.37 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 2.79 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.87 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 2.58 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 0.98 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 7.93 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 5.23 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 2.55 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 2.51 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 8.25 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 5.24 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 3.38 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 2.34 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.80 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.14 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 2.30 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.34 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.53 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 2.79 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.72 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.38 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.41 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.06 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 2.16 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.99 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.69 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.71 | MC |