| SRR4457249 | 2nd_leaf | DAH4 | 1.16 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 0.89 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.63 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.48 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.60 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.56 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.78 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.47 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.27 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.85 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 2.18 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.97 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.27 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.94 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.22 | MC |
| SRR3745125 | anther | wt | 1.22 | MC |
| SRR3745126 | anther | wt | 1.44 | MC |
| SRR3745127 | anther | wt | 2.04 | MC |
| SRR358795 | callus | wt | 1.29 | MC |
| SRR358798 | callus | wt | 0.94 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 3.34 | MC |
| SRR7265400 | coleoptile | 2dA | 0.90 | MC |
| SRR7265401 | coleoptile | 2dA | 1.47 | MC |
| SRR7265402 | coleoptile | 2dA | 0.67 | MC |
| SRR7265403 | coleoptile | 2dN | 0.93 | MC |
| SRR7265404 | coleoptile | 2dN | 0.96 | MC |
| SRR7265405 | coleoptile | 2dN | 1.11 | MC |
| SRR7265406 | coleoptile | 3dA | 0.77 | MC |
| SRR7265407 | coleoptile | 3dA | 0.87 | MC |
| SRR7265408 | coleoptile | 3dA | 0.59 | MC |
| SRR7265409 | coleoptile | 3dN | 1.92 | MC |
| SRR7265410 | coleoptile | 3dN | 1.14 | MC |
| SRR7265411 | coleoptile | 3dN | 1.41 | MC |
| SRR7265413 | coleoptile | 4dA | 1.05 | MC |
| SRR7265414 | coleoptile | 4dA | 0.78 | MC |
| SRR7265415 | coleoptile | 4dN | 1.40 | MC |
| SRR7265416 | coleoptile | 4dN | 2.41 | MC |
| SRR7265417 | coleoptile | 4dN | 1.54 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.10 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.56 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.25 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.47 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.18 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.96 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 2.68 | MC |
| SRR7265373 | embryo | dry seed 0 h | 2.11 | MC |
| SRR7265374 | embryo | dry seed 0 h | 2.24 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.94 | MC |
| SRR7265376 | embryo | 1hA | 1.69 | MC |
| SRR7265377 | embryo | 1hA | 1.59 | MC |
| SRR7265378 | embryo | 1hA | 1.86 | MC |
| SRR7265379 | embryo | 1hN | 1.90 | MC |
| SRR7265380 | embryo | 1hN | 1.88 | MC |
| SRR7265381 | embryo | 1hN | 2.29 | MC |
| SRR7265382 | embryo | 3hA | 0.60 | MC |
| SRR7265383 | embryo | 3hA | 0.50 | MC |
| SRR7265384 | embryo | 3hA | 0.72 | MC |
| SRR7265385 | embryo | 3hN | 1.14 | MC |
| SRR7265386 | embryo | 3hN | 0.92 | MC |
| SRR7265387 | embryo | 3hN | 1.73 | MC |
| SRR7265388 | embryo | 12hA | 1.16 | MC |
| SRR7265389 | embryo | 12hA | 1.38 | MC |
| SRR7265390 | embryo | 12hA | 0.88 | MC |
| SRR7265391 | embryo | 12hN | 1.26 | MC |
| SRR7265392 | embryo | 12hN | 0.97 | MC |
| SRR7265393 | embryo | 12hN | 1.07 | MC |
| SRR7265394 | embryo | 24hA | 1.41 | MC |
| SRR7265395 | embryo | 24hA | 1.56 | MC |
| SRR7265396 | embryo | 24hA | 0.87 | MC |
| SRR7265397 | embryo | 24hN | 0.86 | MC |
| SRR7265398 | embryo | 24hN | 0.82 | MC |
| SRR7265399 | embryo | 24hN | 0.91 | MC |
| SRR2338867 | endosprem | control | 0.84 | MC |
| SRR2338868 | endosprem | high_temperature | 1.57 | MC |
| SRR2338869 | endosprem | high_temperature | 1.74 | MC |
| SRR976168 | flag_leaf | wild_type | 1.45 | MC |
| SRR4457231 | flag_leaf | DAH4 | 1.05 | MC |
| SRR4457232 | flag_leaf | DAH4 | 1.05 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.90 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.44 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.60 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.63 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.86 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.51 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.57 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.37 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.83 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.28 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.76 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.85 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.66 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.06 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.51 | MC |
| SRR1213690 | flower | wt(flower buds) | 3.69 | MC |
| SRR1213691 | flower | wt | 3.10 | MC |
| SRR8240824 | leaf | wild_type | 2.16 | MC |
| SRR8240825 | leaf | wild_type | 2.41 | MC |
| SRR8240818 | leaf | wild_type | 1.45 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 3.65 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 4.36 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.47 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.94 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.73 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.21 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.99 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.84 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.84 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.74 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.65 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.96 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.71 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.83 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 4.43 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 3.74 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 3.82 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.34 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.15 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.70 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.63 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.33 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.88 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.84 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.11 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.05 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.01 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.92 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.73 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.26 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.01 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 4.20 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 3.39 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 5.53 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 3.52 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 2.31 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 3.52 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 2.31 | MC |
| SRR1761528 | leaf | drought | 5.53 | MC |
| SRR1761530 | leaf | control | 3.52 | MC |
| SRR1761531 | leaf | control | 2.31 | MC |
| SRR504365 | leaf | wt | 2.34 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.01 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.06 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.04 | MC |
| SRR6417967 | leaf | H2O_control | 1.62 | MC |
| SRR6417968 | leaf | H2O_control | 2.78 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 2.59 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.48 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 2.68 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 3.87 | MC |
| SRR6502088 | leaf | control | 1.46 | MC |
| SRR6502089 | leaf | control | 2.31 | MC |
| SRR6502090 | leaf | control | 1.75 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 2.41 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.78 | MC |
| SRR6502100 | leaf | control | 1.80 | MC |
| SRR6502101 | leaf | control | 1.76 | MC |
| SRR6502102 | leaf | control | 2.24 | MC |
| SRR8582892 | panicle | PM | 6.17 | MC |
| SRR4947496 | root | control | 1.30 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.25 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.79 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.99 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 5.15 | MC |
| SRR5126147 | root | "mock,1_day" | 1.00 | MC |
| SRR5126148 | root | "mock,1_day" | 1.10 | MC |
| SRR5126149 | root | "mock,1_day" | 1.41 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.23 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.84 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.69 | MC |
| SRR5126153 | root | "mock,7_days" | 0.95 | MC |
| SRR5126155 | root | "mock,7_days" | 1.60 | MC |
| SRR5126157 | root | "mock,7_days" | 2.30 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.88 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.77 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 3.39 | MC |
| SRR5126165 | root | "mock,14_days" | 1.00 | MC |
| SRR5126167 | root | "mock,14_days" | 0.67 | MC |
| SRR5126169 | root | "mock,14_days" | 1.86 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 4.09 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.30 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 4.48 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.74 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.68 | MC |
| SRR1213694 | root | wt | 0.46 | MC |
| SRR4947480 | root | control | 1.53 | MC |
| SRR4947481 | root | control | 1.68 | MC |
| SRR4947484 | root | Al | 1.47 | MC |
| SRR4947485 | root | Al | 2.10 | MC |
| SRR4947488 | root | control | 2.17 | MC |
| SRR4947489 | root | control | 1.77 | MC |
| SRR4947492 | root | Al | 1.28 | MC |
| SRR4947493 | root | Al | 1.70 | MC |
| SRR4947497 | root | control | 1.80 | MC |
| SRR4947500 | root | Al | 1.22 | MC |
| SRR4947501 | root | Al | 2.77 | MC |
| SRR4947504 | root | control | 1.59 | MC |
| SRR4947505 | root | control | 1.73 | MC |
| SRR4947508 | root | Al | 0.79 | MC |
| SRR4947509 | root | Al | 1.17 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.58 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.82 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.70 | MC |
| SRR6502094 | root | control | 0.44 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.46 | MC |
| SRR6502107 | root | control | 0.56 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.51 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.30 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.42 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.19 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.77 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.55 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.24 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.48 | MC |
| SRR2857721 | seedling | drought_stress_6h | 2.05 | MC |
| SRR358791 | seedling | wt | 4.44 | MC |
| SRR358792 | seedling | wt | 3.81 | MC |
| SRR358793 | seedling | wt | 5.14 | MC |
| SRR358794 | seedling | wt | 4.71 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.86 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.70 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 11.25 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.76 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.96 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.34 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 3.17 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.49 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.60 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.49 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.17 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.12 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.28 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.83 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.74 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.99 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.29 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.24 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.89 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 2.67 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 3.04 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 3.46 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 6.06 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 5.09 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 4.49 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 2.93 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 3.66 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 2.15 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 4.22 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 4.17 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 3.45 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 2.50 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.63 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 2.70 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 2.41 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 2.27 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 2.00 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.58 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 2.51 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 2.75 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 2.60 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 2.56 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.58 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 2.39 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 3.09 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 2.95 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 3.39 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 4.18 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 4.60 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 2.90 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 4.14 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 4.18 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.39 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.16 | MC |