| SRR4457252 | 2nd_leaf | DAH12 | 1.00 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.19 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.63 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.39 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.53 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.45 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 1.30 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 2.00 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.93 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.20 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.45 | MC |
| SRR3745126 | anther | wt | 0.52 | MC |
| SRR358795 | callus | wt | 7.22 | MC |
| SRR358797 | callus | wt | 2.31 | MC |
| SRR358798 | callus | wt | 4.85 | MC |
| SRR5560728 | caryopsis | wild_type | 3.32 | MC |
| SRR5560729 | caryopsis | wild_type | 3.43 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 3.05 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.57 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.76 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.73 | MC |
| SRR7265408 | coleoptile | 3dA | 0.33 | MC |
| SRR7265409 | coleoptile | 3dN | 0.50 | MC |
| SRR7265412 | coleoptile | 4dA | 0.91 | MC |
| SRR7265416 | coleoptile | 4dN | 0.51 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.45 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 3.15 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.88 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 2.73 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 3.47 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 2.43 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.50 | MC |
| SRR7265389 | embryo | 12hA | 0.98 | MC |
| SRR7265390 | embryo | 12hA | 0.97 | MC |
| SRR7265392 | embryo | 12hN | 0.82 | MC |
| SRR7265393 | embryo | 12hN | 1.80 | MC |
| SRR7265394 | embryo | 24hA | 0.77 | MC |
| SRR4457231 | flag_leaf | DAH4 | 1.24 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.97 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.85 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.67 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.67 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.91 | MC |
| SRR4457248 | flag_leaf | DAH44 | 0.83 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.46 | MC |
| SRR8060835 | leaf | wild_type | 0.53 | MC |
| SRR8060836 | leaf | wild_type | 1.09 | MC |
| SRR8060837 | leaf | wild_type | 0.65 | MC |
| SRR8240824 | leaf | wild_type | 0.28 | MC |
| SRR8240825 | leaf | wild_type | 0.88 | MC |
| SRR8240819 | leaf | wild_type | 0.47 | MC |
| SRR8240820 | leaf | wild_type | 0.50 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.38 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.78 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.96 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.14 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.32 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.41 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.86 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.41 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.50 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.15 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 3.58 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.84 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.14 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.66 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.88 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.62 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.29 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.85 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.67 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.41 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.75 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.47 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.84 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.19 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.72 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.81 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 1.41 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 2.94 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 1.41 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 2.94 | MC |
| SRR1761530 | leaf | control | 1.41 | MC |
| SRR1761531 | leaf | control | 2.94 | MC |
| SRR6417967 | leaf | H2O_control | 2.34 | MC |
| SRR6417969 | leaf | H2O_control | 3.28 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 2.35 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 3.04 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.38 | MC |
| SRR8611902 | leaf | Non-inoculated | 2.19 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.45 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.65 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.39 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.06 | MC |
| SRR1213692 | leaf | wt | 1.14 | MC |
| SRR6502090 | leaf | control | 1.48 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 2.39 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 2.25 | MC |
| SRR6502100 | leaf | control | 0.87 | MC |
| SRR6502101 | leaf | control | 1.27 | MC |
| SRR6502102 | leaf | control | 0.79 | MC |
| SRR5856927 | leaf | control | 1.46 | MC |
| SRR5856928 | leaf | control | 1.65 | MC |
| SRR5856933 | leaf | control | 2.32 | MC |
| SRR5856934 | leaf | control | 1.96 | MC |
| SRR5856935 | leaf | control | 2.32 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 4.13 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 5.02 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 5.92 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 3.15 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 2.88 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 5.23 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 3.00 | MC |
| SRR6168973 | leaf | none (control) | 3.07 | MC |
| SRR6168974 | leaf | none (control) | 3.19 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 2.36 | MC |
| SRR8582889 | panicle | AM | 0.27 | MC |
| SRR8582890 | panicle | AM | 0.29 | MC |
| SRR8582891 | panicle | PM | 1.04 | MC |
| SRR8582893 | panicle | PM | 0.52 | MC |
| SRR5110429 | panicle | Dawn | 2.08 | MC |
| SRR5110430 | panicle | Dawn | 2.10 | MC |
| SRR5110431 | panicle | Dawn | 1.08 | MC |
| SRR5110432 | panicle | Dawn | 1.17 | MC |
| SRR4947496 | root | control | 0.88 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 3.44 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.79 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 2.68 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 1.00 | MC |
| SRR5110439 | panicle | Dawn + 7h | 3.71 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.97 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.02 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.72 | MC |
| SRR5110446 | panicle | Dusk | 1.02 | MC |
| SRR5110447 | panicle | Dusk | 0.92 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.26 | MC |
| SRR5110450 | panicle | Dawn + 14h | 0.80 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.19 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.22 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.67 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.93 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.61 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.11 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.37 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.26 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.67 | MC |
| SRR1633182 | panicle | WT | 0.36 | MC |
| SRR1633185 | panicle | WT | 0.33 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 2.87 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.35 | MC |
| SRR5126147 | root | "mock,1_day" | 2.42 | MC |
| SRR5126148 | root | "mock,1_day" | 1.85 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.50 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.57 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.74 | MC |
| SRR5126153 | root | "mock,7_days" | 0.97 | MC |
| SRR5126157 | root | "mock,7_days" | 1.71 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.99 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.12 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.05 | MC |
| SRR5126165 | root | "mock,14_days" | 2.10 | MC |
| SRR5126169 | root | "mock,14_days" | 2.70 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.75 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.91 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.45 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.84 | MC |
| SRR1213695 | root | wt | 0.91 | MC |
| SRR4947478 | root | control | 0.80 | MC |
| SRR4947482 | root | Al | 0.52 | MC |
| SRR4947488 | root | control | 0.56 | MC |
| SRR4947489 | root | control | 0.46 | MC |
| SRR4947497 | root | control | 0.88 | MC |
| SRR4947498 | root | Al | 1.27 | MC |
| SRR4947499 | root | Al | 0.70 | MC |
| SRR4947502 | root | control | 0.54 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.02 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.15 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.61 | MC |
| SRR6502094 | root | control | 0.72 | MC |
| SRR6502105 | root | 100 mM NaCl | 2.28 | MC |
| SRR6502106 | root | control | 0.69 | MC |
| SRR6502107 | root | control | 0.34 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.51 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.52 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.24 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.40 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.29 | MC |
| SRR6441555 | seedling | wild_type | 0.87 | MC |
| SRR2154086 | seedling | wt | 1.11 | MC |
| SRR2154082 | seedling | wt | 0.29 | MC |
| SRR2154083 | seedling | wt | 1.46 | MC |
| SRR3098743 | seedling | wt | 0.94 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.71 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.57 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 1.01 | MC |
| SRR1944583 | seedling | no_treatment | 0.59 | MC |
| SRR358792 | seedling | wt | 0.73 | MC |
| SRR358793 | seedling | wt | 0.51 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.60 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.23 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.93 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.81 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.97 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 2.88 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 2.20 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.53 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.97 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.77 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.43 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.05 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.14 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.54 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.81 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.10 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.87 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.15 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.97 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 3.04 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.03 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.08 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.25 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.79 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 4.72 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 1.33 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 1.61 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 1.00 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 0.90 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.00 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 0.59 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.50 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.79 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 0.79 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 1.31 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.43 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 0.92 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 0.99 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 0.89 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 1.22 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 3.09 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.53 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.52 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.64 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 3.87 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 2.90 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 3.93 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.65 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.64 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 3.53 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 2.20 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.89 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.87 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.92 | MC |