| SRR4457249 | 2nd_leaf | DAH4 | 4.86 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 3.43 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 5.35 | MC |
| SRR6320473 | carpel | wt | 4.15 | MC |
| SRR6320498 | carpel | wt | 4.89 | MC |
| SRR4947495 | root | control | 3.95 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 4.23 | MC |
| SRR7265405 | coleoptile | 2dN | 3.17 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.76 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.22 | MC |
| SRR7265388 | embryo | 12hA | 3.55 | MC |
| SRR7265395 | embryo | 24hA | 3.71 | MC |
| SRR7265396 | embryo | 24hA | 4.37 | MC |
| SRR7265397 | embryo | 24hN | 5.24 | MC |
| SRR2338868 | endosprem | high_temperature | 2.02 | MC |
| SRR2338869 | endosprem | high_temperature | 1.44 | MC |
| SRR4457231 | flag_leaf | DAH4 | 2.29 | MC |
| SRR4457235 | flag_leaf | DAH12 | 2.47 | MC |
| SRR4457247 | flag_leaf | DAH44 | 2.37 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.76 | MC |
| SRR1213691 | flower | wt | 1.48 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 3.36 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.37 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 3.77 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.45 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.75 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.55 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.40 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.45 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.63 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.47 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.74 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 2.87 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 6.19 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 2.99 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.46 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.18 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.58 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.39 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.28 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.70 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.30 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 5.58 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.46 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 5.40 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 4.35 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 4.35 | MC |
| SRR1761531 | leaf | control | 4.35 | MC |
| SRR504365 | leaf | wt | 4.07 | MC |
| SRR6417968 | leaf | H2O_control | 2.70 | MC |
| SRR6417969 | leaf | H2O_control | 1.05 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 2.92 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.68 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.64 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.78 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.93 | MC |
| SRR6502088 | leaf | control | 3.26 | MC |
| SRR6168974 | leaf | none (control) | 3.62 | MC |
| SRR6168975 | leaf | none (control) | 4.04 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 3.22 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.99 | MC |
| SRR8582888 | panicle | AM | 1.30 | MC |
| SRR8582890 | panicle | AM | 2.34 | MC |
| SRR8582891 | panicle | PM | 4.96 | MC |
| SRR8582892 | panicle | PM | 3.06 | MC |
| SRR8582893 | panicle | PM | 3.08 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 3.28 | MC |
| SRR5110447 | panicle | Dusk | 2.09 | MC |
| SRR5110452 | panicle | Dawn + 14h | 3.10 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.93 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.94 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 6.56 | MC |
| SRR5126147 | root | "mock,1_day" | 1.97 | MC |
| SRR5126149 | root | "mock,1_day" | 3.01 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 3.11 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.14 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 2.21 | MC |
| SRR4947481 | root | control | 3.29 | MC |
| SRR4947483 | root | Al | 2.94 | MC |
| SRR4947487 | root | control | 4.34 | MC |
| SRR4947488 | root | control | 1.85 | MC |
| SRR4947489 | root | control | 4.96 | MC |
| SRR4947492 | root | Al | 1.46 | MC |
| SRR4947493 | root | Al | 3.82 | MC |
| SRR4947494 | root | control | 4.18 | MC |
| SRR4947497 | root | control | 4.18 | MC |
| SRR4947500 | root | Al | 4.87 | MC |
| SRR4947502 | root | control | 3.90 | MC |
| SRR4947505 | root | control | 4.61 | MC |
| SRR6502092 | root | 100 mM NaCl | 4.37 | MC |
| SRR6502095 | root | control | 3.96 | MC |
| SRR6502096 | root | control | 3.43 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.17 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.34 | MC |
| SRR1740432 | root_elongation_zone | wt | 2.25 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.43 | MC |
| SRR6441554 | seedling | wild_type | 2.43 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 6.93 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.24 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.31 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.75 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.46 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.87 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 3.56 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 7.68 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 5.97 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.82 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 7.23 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 4.29 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.60 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.11 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 2.06 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 2.73 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 4.25 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 3.29 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 4.56 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 2.61 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 2.23 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 2.31 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 2.17 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.70 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.20 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 2.60 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.37 | MC |