| SRR3745125 | anther | wt | 2.81 | MC |
| SRR3745126 | anther | wt | 1.23 | MC |
| SRR3745127 | anther | wt | 1.64 | MC |
| SRR5560729 | caryopsis | wild_type | 0.41 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.35 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.36 | MC |
| SRR7265379 | embryo | 1hN | 0.46 | MC |
| SRR7265381 | embryo | 1hN | 0.31 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.23 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.32 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.39 | MC |
| SRR1213691 | flower | wt | 0.58 | MC |
| SRR8060835 | leaf | wild_type | 0.24 | MC |
| SRR8060836 | leaf | wild_type | 0.52 | MC |
| SRR8060837 | leaf | wild_type | 0.40 | MC |
| SRR8240824 | leaf | wild_type | 0.32 | MC |
| SRR8240825 | leaf | wild_type | 0.37 | MC |
| SRR8240826 | leaf | wild_type | 0.37 | MC |
| SRR8240820 | leaf | wild_type | 0.28 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.38 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.68 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.23 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.19 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.82 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.34 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.30 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.53 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.35 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.44 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.46 | MC |
| SRR1761529 | leaf | drought | 0.43 | MC |
| SRR1761531 | leaf | control | 0.44 | MC |
| SRR504365 | leaf | wt | 0.26 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.50 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.53 | MC |
| SRR6417969 | leaf | H2O_control | 0.41 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.37 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.59 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.79 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.57 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.47 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.22 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.67 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.71 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.21 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.28 | MC |
| SRR1213693 | leaf | wt | 0.28 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.57 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.46 | MC |
| SRR6502100 | leaf | control | 0.38 | MC |
| SRR6502102 | leaf | control | 0.47 | MC |
| SRR6168973 | leaf | none (control) | 0.57 | MC |
| SRR6168974 | leaf | none (control) | 0.59 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.26 | MC |
| SRR8582888 | panicle | AM | 1.06 | MC |
| SRR8582889 | panicle | AM | 0.94 | MC |
| SRR8582890 | panicle | AM | 0.63 | MC |
| SRR8582892 | panicle | PM | 0.67 | MC |
| SRR8582893 | panicle | PM | 0.47 | MC |
| SRR1633182 | panicle | WT | 0.90 | MC |
| SRR1633185 | panicle | WT | 1.53 | MC |
| SRR5126148 | root | "mock,1_day" | 0.27 | MC |
| SRR5126167 | root | "mock,14_days" | 0.32 | MC |
| SRR1213695 | root | wt | 0.25 | MC |
| SRR4947501 | root | Al | 0.64 | MC |
| SRR4947504 | root | control | 0.69 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.47 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.38 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.20 | MC |
| SRR2154086 | seedling | wt | 0.48 | MC |
| SRR3098741 | seedling | wt | 0.33 | MC |
| SRR3098742 | seedling | wt | 0.36 | MC |
| SRR3098743 | seedling | wt | 0.20 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.24 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.99 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.82 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.96 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 13.19 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.08 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.82 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.73 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.35 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.31 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.35 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.34 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.30 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.33 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.96 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.79 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.66 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.43 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.32 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.45 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.93 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.35 | MC |