| SRR3745125 | anther | wt | 1.14 | MC |
| SRR3745127 | anther | wt | 0.98 | MC |
| SRR5560727 | caryopsis | wild_type | 0.26 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.11 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.56 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.25 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.29 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.41 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.30 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.48 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.01 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.65 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.54 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.69 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.36 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.52 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.33 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.59 | MC |
| SRR1213692 | leaf | wt | 0.29 | MC |
| SRR1213693 | leaf | wt | 0.30 | MC |
| SRR6168981 | leaf | none (control) | 0.29 | MC |
| SRR8582888 | panicle | AM | 0.64 | MC |
| SRR8582889 | panicle | AM | 0.36 | MC |
| SRR8582890 | panicle | AM | 0.20 | MC |
| SRR8582893 | panicle | PM | 0.52 | MC |
| SRR5126147 | root | "mock,1_day" | 0.42 | MC |
| SRR5126148 | root | "mock,1_day" | 0.65 | MC |
| SRR5126149 | root | "mock,1_day" | 0.65 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.02 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.09 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.94 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.43 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.51 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.56 | MC |
| SRR5126165 | root | "mock,14_days" | 0.36 | MC |
| SRR5126167 | root | "mock,14_days" | 0.45 | MC |
| SRR5126169 | root | "mock,14_days" | 0.56 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.63 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.41 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.70 | MC |
| SRR1213694 | root | wt | 0.59 | MC |
| SRR1213695 | root | wt | 0.44 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.46 | MC |
| SRR3098741 | seedling | wt | 0.29 | MC |
| SRR3098742 | seedling | wt | 0.39 | MC |
| SRR3098743 | seedling | wt | 0.31 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.57 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.44 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.80 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.54 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.13 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.76 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.66 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.04 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.56 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.36 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.17 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.20 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.27 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.17 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.30 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.33 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.40 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.34 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.38 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.38 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.30 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.50 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.65 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.35 | MC |