| SRR4457261 | 2nd_leaf | DAH36 | 0.60 | MC |
| SRR358797 | callus | wt | 3.61 | MC |
| SRR358798 | callus | wt | 2.02 | MC |
| SRR5560727 | caryopsis | wild_type | 0.29 | MC |
| SRR5560728 | caryopsis | wild_type | 0.78 | MC |
| SRR5560729 | caryopsis | wild_type | 1.53 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.47 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.93 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.02 | MC |
| SRR4947495 | root | control | 4.79 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.73 | MC |
| SRR7265403 | coleoptile | 2dN | 3.49 | MC |
| SRR7265409 | coleoptile | 3dN | 2.28 | MC |
| SRR7265410 | coleoptile | 3dN | 3.30 | MC |
| SRR7265413 | coleoptile | 4dA | 2.34 | MC |
| SRR7265414 | coleoptile | 4dA | 1.69 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 3.08 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.22 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.75 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.41 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.59 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.42 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.97 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.97 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 2.60 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.45 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.63 | MC |
| SRR7265382 | embryo | 3hA | 0.48 | MC |
| SRR7265390 | embryo | 12hA | 4.48 | MC |
| SRR7265391 | embryo | 12hN | 2.53 | MC |
| SRR7265392 | embryo | 12hN | 1.51 | MC |
| SRR7265393 | embryo | 12hN | 2.39 | MC |
| SRR7265397 | embryo | 24hN | 4.30 | MC |
| SRR7265399 | embryo | 24hN | 4.20 | MC |
| SRR2338867 | endosprem | control | 0.41 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.97 | MC |
| SRR8240824 | leaf | wild_type | 0.97 | MC |
| SRR8240825 | leaf | wild_type | 0.80 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.82 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.32 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.47 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.47 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.43 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.65 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.71 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.48 | MC |
| SRR6502088 | leaf | control | 0.60 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.62 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.78 | MC |
| SRR6502100 | leaf | control | 0.82 | MC |
| SRR6502101 | leaf | control | 0.93 | MC |
| SRR6502102 | leaf | control | 1.15 | MC |
| SRR5856927 | leaf | control | 0.38 | MC |
| SRR5856928 | leaf | control | 0.31 | MC |
| SRR5856929 | leaf | control | 0.82 | MC |
| SRR5856930 | leaf | salt | 0.51 | MC |
| SRR5856931 | leaf | salt | 0.15 | MC |
| SRR5856933 | leaf | control | 1.19 | MC |
| SRR5856934 | leaf | control | 1.25 | MC |
| SRR5856935 | leaf | control | 0.79 | MC |
| SRR5856936 | leaf | salt | 0.70 | MC |
| SRR5856937 | leaf | salt | 0.36 | MC |
| SRR5856938 | leaf | salt | 0.23 | MC |
| SRR6168973 | leaf | none (control) | 1.24 | MC |
| SRR6168974 | leaf | none (control) | 2.63 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.84 | MC |
| SRR8582889 | panicle | AM | 0.11 | MC |
| SRR8582890 | panicle | AM | 0.28 | MC |
| SRR5110429 | panicle | Dawn | 1.01 | MC |
| SRR5110430 | panicle | Dawn | 1.45 | MC |
| SRR5110431 | panicle | Dawn | 0.63 | MC |
| SRR5110432 | panicle | Dawn | 1.69 | MC |
| SRR4947496 | root | control | 2.89 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 0.62 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.42 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.97 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 0.61 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.21 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.74 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 0.67 | MC |
| SRR5110446 | panicle | Dusk | 3.10 | MC |
| SRR5110447 | panicle | Dusk | 1.82 | MC |
| SRR5110448 | panicle | Dusk | 0.80 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.37 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.60 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 3.11 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.73 | MC |
| SRR5110459 | panicle | Dawn + 21h | 3.23 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.55 | MC |
| SRR1633182 | panicle | WT | 2.44 | MC |
| SRR1633185 | panicle | WT | 2.93 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.90 | MC |
| SRR5126147 | root | "mock,1_day" | 2.62 | MC |
| SRR5126148 | root | "mock,1_day" | 3.01 | MC |
| SRR5126149 | root | "mock,1_day" | 1.38 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.90 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.35 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.81 | MC |
| SRR5126153 | root | "mock,7_days" | 3.84 | MC |
| SRR5126155 | root | "mock,7_days" | 1.83 | MC |
| SRR5126157 | root | "mock,7_days" | 1.76 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.49 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.12 | MC |
| SRR5126165 | root | "mock,14_days" | 1.99 | MC |
| SRR5126167 | root | "mock,14_days" | 0.68 | MC |
| SRR5126169 | root | "mock,14_days" | 1.88 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.33 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.34 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.50 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.80 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.80 | MC |
| SRR1213694 | root | wt | 1.26 | MC |
| SRR4947479 | root | control | 1.84 | MC |
| SRR4947480 | root | control | 2.74 | MC |
| SRR4947481 | root | control | 4.11 | MC |
| SRR4947482 | root | Al | 1.50 | MC |
| SRR4947483 | root | Al | 1.38 | MC |
| SRR4947484 | root | Al | 3.33 | MC |
| SRR4947485 | root | Al | 2.82 | MC |
| SRR4947487 | root | control | 1.14 | MC |
| SRR4947488 | root | control | 3.15 | MC |
| SRR4947489 | root | control | 1.91 | MC |
| SRR4947490 | root | Al | 0.53 | MC |
| SRR4947491 | root | Al | 2.27 | MC |
| SRR4947492 | root | Al | 3.68 | MC |
| SRR4947493 | root | Al | 2.18 | MC |
| SRR4947494 | root | control | 1.27 | MC |
| SRR4947497 | root | control | 4.09 | MC |
| SRR4947498 | root | Al | 2.34 | MC |
| SRR4947500 | root | Al | 4.83 | MC |
| SRR4947503 | root | control | 2.43 | MC |
| SRR4947506 | root | Al | 1.12 | MC |
| SRR4947507 | root | Al | 2.53 | MC |
| SRR4947508 | root | Al | 3.18 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.58 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.68 | MC |
| SRR6502093 | root | 100 mM NaCl | 2.09 | MC |
| SRR6502094 | root | control | 1.67 | MC |
| SRR6502095 | root | control | 2.03 | MC |
| SRR6502096 | root | control | 2.34 | MC |
| SRR6502103 | root | 100 mM NaCl | 2.86 | MC |
| SRR6502104 | root | 100 mM NaCl | 2.34 | MC |
| SRR6502105 | root | 100 mM NaCl | 2.49 | MC |
| SRR6502106 | root | control | 1.97 | MC |
| SRR6502107 | root | control | 2.01 | MC |
| SRR6502108 | root | control | 3.50 | MC |
| SRR1740434 | root_differentiation_zone | wt | 2.40 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.70 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.79 | MC |
| SRR6441554 | seedling | wild_type | 1.45 | MC |
| SRR6441555 | seedling | wild_type | 1.09 | MC |
| SRR2154086 | seedling | wt | 3.46 | MC |
| SRR2154082 | seedling | wt | 2.82 | MC |
| SRR2154084 | seedling | wt | 2.48 | MC |
| SRR2154087 | seedling | wt | 1.45 | MC |
| SRR3098741 | seedling | wt | 1.88 | MC |
| SRR3098742 | seedling | wt | 2.09 | MC |
| SRR3098743 | seedling | wt | 1.80 | MC |
| SRR2857719 | seedling | drought_stress_0h | 2.39 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.88 | MC |
| SRR1944583 | seedling | no_treatment | 2.14 | MC |
| SRR358792 | seedling | wt | 1.21 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.05 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.65 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.19 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.78 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.49 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.36 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 2.87 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.89 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.06 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.02 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.02 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.61 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.10 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.68 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.74 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.45 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.92 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.72 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.01 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.95 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.58 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.83 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.67 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.41 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.45 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 2.96 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.55 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.33 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 1.44 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 2.34 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 1.50 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 2.05 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 4.78 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.56 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.87 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 2.70 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 4.53 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 0.76 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 2.73 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 2.76 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 2.56 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.08 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.18 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 2.04 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.21 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 5.24 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.99 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 2.36 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 6.12 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.27 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.28 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.73 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.25 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 3.29 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.28 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 2.79 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.72 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.68 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.40 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 0.62 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.23 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.14 | MC |