| SRR4457254 | 2nd_leaf | DAH12 | 0.30 | MC |
| SRR358795 | callus | wt | 4.63 | MC |
| SRR358796 | callus | wt | 4.80 | MC |
| SRR358797 | callus | wt | 2.88 | MC |
| SRR358798 | callus | wt | 5.40 | MC |
| SRR6320473 | carpel | wt | 1.94 | MC |
| SRR5560727 | caryopsis | wild_type | 4.87 | MC |
| SRR5560728 | caryopsis | wild_type | 1.66 | MC |
| SRR5560729 | caryopsis | wild_type | 2.75 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.60 | MC |
| SRR7265400 | coleoptile | 2dA | 0.35 | MC |
| SRR7265403 | coleoptile | 2dN | 0.63 | MC |
| SRR7265404 | coleoptile | 2dN | 0.35 | MC |
| SRR7265405 | coleoptile | 2dN | 0.41 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.55 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.30 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.66 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.28 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.37 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.13 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.65 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 2.12 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 2.06 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.66 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.81 | MC |
| SRR7265378 | embryo | 1hA | 0.25 | MC |
| SRR7265380 | embryo | 1hN | 0.59 | MC |
| SRR7265381 | embryo | 1hN | 0.33 | MC |
| SRR7265387 | embryo | 3hN | 0.40 | MC |
| SRR7265388 | embryo | 12hA | 0.96 | MC |
| SRR7265389 | embryo | 12hA | 0.90 | MC |
| SRR7265390 | embryo | 12hA | 1.18 | MC |
| SRR7265392 | embryo | 12hN | 0.83 | MC |
| SRR7265394 | embryo | 24hA | 0.97 | MC |
| SRR7265399 | embryo | 24hN | 0.72 | MC |
| SRR2338869 | endosprem | high_temperature | 0.87 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.20 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.27 | MC |
| SRR1213691 | flower | wt | 2.27 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.37 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.84 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.20 | MC |
| SRR5856927 | leaf | control | 1.83 | MC |
| SRR5856928 | leaf | control | 1.85 | MC |
| SRR5856929 | leaf | control | 1.93 | MC |
| SRR5856930 | leaf | salt | 0.75 | MC |
| SRR5856931 | leaf | salt | 0.90 | MC |
| SRR5856932 | leaf | salt | 1.19 | MC |
| SRR5856936 | leaf | salt | 0.79 | MC |
| SRR5856937 | leaf | salt | 1.19 | MC |
| SRR5856938 | leaf | salt | 0.73 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 1.85 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 5.04 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 2.81 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.38 | MC |
| SRR5110429 | panicle | Dawn | 1.93 | MC |
| SRR5110430 | panicle | Dawn | 1.87 | MC |
| SRR5110431 | panicle | Dawn | 1.45 | MC |
| SRR5110432 | panicle | Dawn | 1.41 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.15 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.48 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 2.39 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 2.59 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.86 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.98 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.65 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.10 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 2.21 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.32 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.84 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.52 | MC |
| SRR5110445 | panicle | Dusk | 1.49 | MC |
| SRR5110446 | panicle | Dusk | 2.23 | MC |
| SRR5110447 | panicle | Dusk | 3.14 | MC |
| SRR5110448 | panicle | Dusk | 2.43 | MC |
| SRR5110449 | panicle | Dawn + 14h | 4.13 | MC |
| SRR5110450 | panicle | Dawn + 14h | 0.91 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.33 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.75 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.92 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.36 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.82 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 3.41 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.96 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.15 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.82 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.32 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.37 | MC |
| SRR1633182 | panicle | WT | 4.72 | MC |
| SRR1633185 | panicle | WT | 4.52 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.37 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.49 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.46 | MC |
| SRR5126147 | root | "mock,1_day" | 0.84 | MC |
| SRR5126148 | root | "mock,1_day" | 0.39 | MC |
| SRR5126149 | root | "mock,1_day" | 0.75 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.27 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.83 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.85 | MC |
| SRR5126153 | root | "mock,7_days" | 0.95 | MC |
| SRR5126157 | root | "mock,7_days" | 1.04 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.63 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.87 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.55 | MC |
| SRR5126165 | root | "mock,14_days" | 0.42 | MC |
| SRR5126167 | root | "mock,14_days" | 0.48 | MC |
| SRR5126169 | root | "mock,14_days" | 1.35 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.34 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 3.06 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.18 | MC |
| SRR1213694 | root | wt | 1.32 | MC |
| SRR1213695 | root | wt | 0.14 | MC |
| SRR4947501 | root | Al | 0.88 | MC |
| SRR4947505 | root | control | 1.14 | MC |
| SRR4947508 | root | Al | 0.52 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.66 | MC |
| SRR6502092 | root | 100 mM NaCl | 2.02 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.27 | MC |
| SRR6502094 | root | control | 0.73 | MC |
| SRR6502095 | root | control | 1.26 | MC |
| SRR6502096 | root | control | 0.94 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.70 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.75 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.53 | MC |
| SRR6502106 | root | control | 1.07 | MC |
| SRR6502107 | root | control | 1.77 | MC |
| SRR6502108 | root | control | 0.87 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.41 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.80 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.37 | MC |
| SRR1740432 | root_elongation_zone | wt | 2.58 | MC |
| SRR1740433 | root_elongation_zone | wt | 2.07 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.44 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.80 | MC |
| SRR2154086 | seedling | wt | 0.74 | MC |
| SRR2154082 | seedling | wt | 1.23 | MC |
| SRR2154083 | seedling | wt | 0.86 | MC |
| SRR2154084 | seedling | wt | 1.58 | MC |
| SRR2154085 | seedling | wt | 0.36 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.08 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.52 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 3.75 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 13.00 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.04 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.46 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.79 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.42 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.66 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.39 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.80 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.47 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 6.55 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 2.87 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 3.29 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 1.92 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 1.75 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.90 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 3.01 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 2.00 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 2.85 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 1.07 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.30 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 1.33 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.55 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 1.73 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 1.11 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 3.17 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.49 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 1.56 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.91 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.68 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.46 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.60 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.44 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.60 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.90 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.40 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.64 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.53 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.63 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 2.09 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 2.14 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 3.04 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 2.38 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.43 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 2.22 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.32 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.99 | MC |