| SRR358795 | callus | wt | 3.40 | MC |
| SRR358796 | callus | wt | 3.59 | MC |
| SRR358797 | callus | wt | 3.53 | MC |
| SRR358798 | callus | wt | 3.89 | MC |
| SRR5560727 | caryopsis | wild_type | 0.26 | MC |
| SRR4947495 | root | control | 0.68 | MC |
| SRR7265400 | coleoptile | 2dA | 0.91 | MC |
| SRR7265401 | coleoptile | 2dA | 1.66 | MC |
| SRR7265402 | coleoptile | 2dA | 1.60 | MC |
| SRR7265403 | coleoptile | 2dN | 1.92 | MC |
| SRR7265404 | coleoptile | 2dN | 1.55 | MC |
| SRR7265405 | coleoptile | 2dN | 1.47 | MC |
| SRR7265406 | coleoptile | 3dA | 0.77 | MC |
| SRR7265407 | coleoptile | 3dA | 0.65 | MC |
| SRR7265408 | coleoptile | 3dA | 0.52 | MC |
| SRR7265409 | coleoptile | 3dN | 1.92 | MC |
| SRR7265410 | coleoptile | 3dN | 1.34 | MC |
| SRR7265411 | coleoptile | 3dN | 2.59 | MC |
| SRR7265412 | coleoptile | 4dA | 0.56 | MC |
| SRR7265413 | coleoptile | 4dA | 0.98 | MC |
| SRR7265414 | coleoptile | 4dA | 0.65 | MC |
| SRR7265415 | coleoptile | 4dN | 1.39 | MC |
| SRR7265416 | coleoptile | 4dN | 1.08 | MC |
| SRR7265417 | coleoptile | 4dN | 1.01 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.43 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.80 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.42 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.45 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.70 | MC |
| SRR7265376 | embryo | 1hA | 0.48 | MC |
| SRR7265377 | embryo | 1hA | 0.98 | MC |
| SRR7265378 | embryo | 1hA | 0.43 | MC |
| SRR7265382 | embryo | 3hA | 0.44 | MC |
| SRR7265388 | embryo | 12hA | 1.29 | MC |
| SRR7265389 | embryo | 12hA | 2.05 | MC |
| SRR7265390 | embryo | 12hA | 1.54 | MC |
| SRR7265391 | embryo | 12hN | 2.05 | MC |
| SRR7265392 | embryo | 12hN | 1.90 | MC |
| SRR7265393 | embryo | 12hN | 1.62 | MC |
| SRR7265394 | embryo | 24hA | 1.63 | MC |
| SRR7265395 | embryo | 24hA | 1.91 | MC |
| SRR7265396 | embryo | 24hA | 1.84 | MC |
| SRR7265397 | embryo | 24hN | 2.39 | MC |
| SRR7265398 | embryo | 24hN | 3.09 | MC |
| SRR7265399 | embryo | 24hN | 2.03 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.21 | MC |
| SRR8240824 | leaf | wild_type | 0.64 | MC |
| SRR8240826 | leaf | wild_type | 0.21 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.62 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.35 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.96 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.18 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.95 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.00 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.67 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.24 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.81 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.52 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.38 | MC |
| SRR504365 | leaf | wt | 0.73 | MC |
| SRR6417967 | leaf | H2O_control | 0.59 | MC |
| SRR6417968 | leaf | H2O_control | 0.46 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.30 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.22 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.81 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.52 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.63 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.50 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.54 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.91 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.19 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.54 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.13 | MC |
| SRR1213692 | leaf | wt | 0.54 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.34 | MC |
| SRR6502088 | leaf | control | 0.30 | MC |
| SRR6502090 | leaf | control | 0.35 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.69 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.62 | MC |
| SRR6502102 | leaf | control | 0.86 | MC |
| SRR6168973 | leaf | none (control) | 0.81 | MC |
| SRR6168974 | leaf | none (control) | 1.92 | MC |
| SRR6168975 | leaf | none (control) | 0.64 | MC |
| SRR6168979 | leaf | none (control) | 0.28 | MC |
| SRR6168981 | leaf | none (control) | 0.27 | MC |
| SRR8582888 | panicle | AM | 0.37 | MC |
| SRR8582889 | panicle | AM | 0.33 | MC |
| SRR8582890 | panicle | AM | 0.42 | MC |
| SRR8582891 | panicle | PM | 2.81 | MC |
| SRR8582892 | panicle | PM | 1.28 | MC |
| SRR8582893 | panicle | PM | 2.20 | MC |
| SRR4947496 | root | control | 0.68 | MC |
| SRR1633182 | panicle | WT | 0.67 | MC |
| SRR1633185 | panicle | WT | 0.79 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.05 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.36 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.63 | MC |
| SRR5126155 | root | "mock,7_days" | 0.50 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.83 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.30 | MC |
| SRR5126169 | root | "mock,14_days" | 0.32 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.20 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 4.73 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 5.25 | MC |
| SRR1213695 | root | wt | 0.59 | MC |
| SRR4947478 | root | control | 0.56 | MC |
| SRR4947479 | root | control | 1.38 | MC |
| SRR4947482 | root | Al | 0.72 | MC |
| SRR4947483 | root | Al | 0.60 | MC |
| SRR4947487 | root | control | 1.08 | MC |
| SRR4947491 | root | Al | 0.72 | MC |
| SRR4947494 | root | control | 0.97 | MC |
| SRR4947498 | root | Al | 0.84 | MC |
| SRR4947499 | root | Al | 1.00 | MC |
| SRR4947501 | root | Al | 0.61 | MC |
| SRR4947502 | root | control | 0.63 | MC |
| SRR4947503 | root | control | 1.08 | MC |
| SRR4947504 | root | control | 0.83 | MC |
| SRR4947506 | root | Al | 0.39 | MC |
| SRR4947507 | root | Al | 1.00 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.22 | MC |
| SRR6502092 | root | 100 mM NaCl | 2.09 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.63 | MC |
| SRR6502094 | root | control | 0.71 | MC |
| SRR6502095 | root | control | 0.85 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.95 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.71 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.75 | MC |
| SRR6502106 | root | control | 1.05 | MC |
| SRR6502107 | root | control | 0.81 | MC |
| SRR6502108 | root | control | 1.08 | MC |
| SRR6441554 | seedling | wild_type | 0.43 | MC |
| SRR6441555 | seedling | wild_type | 0.66 | MC |
| SRR2154086 | seedling | wt | 0.79 | MC |
| SRR2154087 | seedling | wt | 0.74 | MC |
| SRR3098741 | seedling | wt | 0.61 | MC |
| SRR3098742 | seedling | wt | 0.82 | MC |
| SRR3098743 | seedling | wt | 0.46 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.75 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.20 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.50 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.53 | MC |
| SRR1944583 | seedling | no_treatment | 0.69 | MC |
| SRR358791 | seedling | wt | 1.13 | MC |
| SRR358793 | seedling | wt | 0.90 | MC |
| SRR358794 | seedling | wt | 1.47 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 3.34 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.26 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.22 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.82 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.32 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.36 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.84 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.18 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.77 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.58 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.81 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.83 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.51 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.19 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.57 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.61 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.04 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.46 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.03 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.98 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.18 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.08 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.96 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.07 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.62 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.53 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.46 | MC |