| SRR5560727 | caryopsis | wild_type | 0.40 | MC |
| SRR5560728 | caryopsis | wild_type | 2.65 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.99 | MC |
| SRR4947495 | root | control | 4.17 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 3.99 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 3.46 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.22 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.42 | MC |
| SRR7265384 | embryo | 3hA | 0.57 | MC |
| SRR7265388 | embryo | 12hA | 4.17 | MC |
| SRR7265390 | embryo | 12hA | 4.05 | MC |
| SRR7265391 | embryo | 12hN | 0.44 | MC |
| SRR7265393 | embryo | 12hN | 1.30 | MC |
| SRR7265397 | embryo | 24hN | 3.01 | MC |
| SRR7265398 | embryo | 24hN | 3.15 | MC |
| SRR7265399 | embryo | 24hN | 2.57 | MC |
| SRR8240824 | leaf | wild_type | 0.33 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 4.04 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.90 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 4.47 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.59 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.33 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.29 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 2.26 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.07 | MC |
| SRR6502088 | leaf | control | 0.74 | MC |
| SRR6502089 | leaf | control | 0.94 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.98 | MC |
| SRR5856927 | leaf | control | 2.03 | MC |
| SRR5856930 | leaf | salt | 1.55 | MC |
| SRR5856932 | leaf | salt | 0.25 | MC |
| SRR5856933 | leaf | control | 0.76 | MC |
| SRR5856934 | leaf | control | 2.10 | MC |
| SRR5856936 | leaf | salt | 1.02 | MC |
| SRR6168973 | leaf | none (control) | 2.89 | MC |
| SRR6168974 | leaf | none (control) | 2.20 | MC |
| SRR6168975 | leaf | none (control) | 1.59 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.91 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 2.75 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.82 | MC |
| SRR5110432 | panicle | Dawn | 1.73 | MC |
| SRR4947496 | root | control | 4.61 | MC |
| SRR5110445 | panicle | Dusk | 0.47 | MC |
| SRR5110446 | panicle | Dusk | 1.45 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.03 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.39 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.79 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.53 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.47 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.31 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.77 | MC |
| SRR5126149 | root | "mock,1_day" | 3.64 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.60 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.40 | MC |
| SRR5126153 | root | "mock,7_days" | 3.46 | MC |
| SRR5126155 | root | "mock,7_days" | 1.30 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.87 | MC |
| SRR5126165 | root | "mock,14_days" | 2.24 | MC |
| SRR5126167 | root | "mock,14_days" | 0.54 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.97 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.45 | MC |
| SRR4947478 | root | control | 3.60 | MC |
| SRR4947479 | root | control | 2.00 | MC |
| SRR4947482 | root | Al | 1.69 | MC |
| SRR4947483 | root | Al | 2.92 | MC |
| SRR4947485 | root | Al | 2.86 | MC |
| SRR4947487 | root | control | 2.51 | MC |
| SRR4947489 | root | control | 4.91 | MC |
| SRR4947490 | root | Al | 2.89 | MC |
| SRR4947491 | root | Al | 4.39 | MC |
| SRR4947498 | root | Al | 1.58 | MC |
| SRR4947501 | root | Al | 5.59 | MC |
| SRR4947503 | root | control | 1.99 | MC |
| SRR4947506 | root | Al | 2.85 | MC |
| SRR4947507 | root | Al | 2.19 | MC |
| SRR4947508 | root | Al | 3.52 | MC |
| SRR6502091 | root | 100 mM NaCl | 3.12 | MC |
| SRR6502092 | root | 100 mM NaCl | 4.47 | MC |
| SRR6502093 | root | 100 mM NaCl | 5.26 | MC |
| SRR6502094 | root | control | 3.42 | MC |
| SRR6502095 | root | control | 4.54 | MC |
| SRR6502103 | root | 100 mM NaCl | 2.62 | MC |
| SRR6502105 | root | 100 mM NaCl | 2.52 | MC |
| SRR6502106 | root | control | 1.65 | MC |
| SRR6502107 | root | control | 2.76 | MC |
| SRR6502108 | root | control | 3.90 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.34 | MC |
| SRR6441555 | seedling | wild_type | 0.90 | MC |
| SRR2154086 | seedling | wt | 4.40 | MC |
| SRR2154083 | seedling | wt | 1.15 | MC |
| SRR2154084 | seedling | wt | 1.52 | MC |
| SRR2154085 | seedling | wt | 3.18 | MC |
| SRR2154087 | seedling | wt | 3.10 | MC |
| SRR3098741 | seedling | wt | 0.25 | MC |
| SRR3098742 | seedling | wt | 1.25 | MC |
| SRR3098743 | seedling | wt | 1.47 | MC |
| SRR2857719 | seedling | drought_stress_0h | 2.47 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.64 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.88 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.30 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.52 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.10 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.91 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.65 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.46 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.33 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.62 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.98 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.50 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.54 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.90 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.28 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.78 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.75 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.81 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.57 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 3.91 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 7.32 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 7.48 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 5.04 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 7.64 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.21 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.54 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.82 | MC |