| SRR4457249 | 2nd_leaf | DAH4 | 2.11 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 2.38 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 2.78 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 2.65 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 2.64 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 2.97 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 2.74 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 2.48 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 2.46 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 3.33 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 2.69 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 2.79 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 2.24 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 2.18 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 4.04 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 3.42 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.93 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 2.65 | MC |
| SRR3745125 | anther | wt | 1.72 | MC |
| SRR3745126 | anther | wt | 1.78 | MC |
| SRR5560727 | caryopsis | wild_type | 4.75 | MC |
| SRR5560729 | caryopsis | wild_type | 3.83 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 2.65 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.21 | MC |
| SRR4947495 | root | control | 3.11 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 2.39 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.48 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.77 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.32 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 2.50 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.51 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.32 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.23 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 2.00 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.13 | MC |
| SRR2338866 | endosprem | control | 2.25 | MC |
| SRR2338867 | endosprem | control | 1.52 | MC |
| SRR2338868 | endosprem | high_temperature | 2.27 | MC |
| SRR2338869 | endosprem | high_temperature | 1.74 | MC |
| SRR976168 | flag_leaf | wild_type | 1.35 | MC |
| SRR4457231 | flag_leaf | DAH4 | 1.54 | MC |
| SRR4457232 | flag_leaf | DAH4 | 2.05 | MC |
| SRR4457233 | flag_leaf | DAH4 | 2.01 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.94 | MC |
| SRR4457235 | flag_leaf | DAH12 | 3.11 | MC |
| SRR4457236 | flag_leaf | DAH12 | 3.44 | MC |
| SRR4457237 | flag_leaf | DAH20 | 2.20 | MC |
| SRR4457238 | flag_leaf | DAH20 | 2.91 | MC |
| SRR4457240 | flag_leaf | DAH28 | 4.62 | MC |
| SRR4457242 | flag_leaf | DAH28 | 2.98 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.84 | MC |
| SRR4457244 | flag_leaf | DAH36 | 2.29 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.77 | MC |
| SRR4457246 | flag_leaf | DAH44 | 2.79 | MC |
| SRR4457247 | flag_leaf | DAH44 | 3.39 | MC |
| SRR4457248 | flag_leaf | DAH44 | 2.90 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.87 | MC |
| SRR1213691 | flower | wt | 1.60 | MC |
| SRR8060835 | leaf | wild_type | 1.59 | MC |
| SRR8060836 | leaf | wild_type | 1.91 | MC |
| SRR8060837 | leaf | wild_type | 1.97 | MC |
| SRR8240824 | leaf | wild_type | 1.56 | MC |
| SRR8240825 | leaf | wild_type | 1.12 | MC |
| SRR8240818 | leaf | wild_type | 1.32 | MC |
| SRR8240819 | leaf | wild_type | 1.76 | MC |
| SRR8240820 | leaf | wild_type | 1.24 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 2.45 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 2.66 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.46 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.38 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.63 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.94 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 6.29 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 2.52 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 2.57 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 1.69 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 2.98 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 2.33 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 2.97 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 2.34 | MC |
| SRR1761530 | leaf | control | 2.97 | MC |
| SRR1761531 | leaf | control | 2.33 | MC |
| SRR504365 | leaf | wt | 3.07 | MC |
| SRR6417967 | leaf | H2O_control | 1.47 | MC |
| SRR6417968 | leaf | H2O_control | 2.99 | MC |
| SRR6417969 | leaf | H2O_control | 1.71 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 2.73 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 3.02 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 3.24 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.91 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 2.75 | MC |
| SRR8611900 | leaf | Non-inoculated | 3.48 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.42 | MC |
| SRR8611902 | leaf | Non-inoculated | 3.00 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.55 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 2.50 | MC |
| SRR1213692 | leaf | wt | 4.29 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 4.28 | MC |
| SRR6502088 | leaf | control | 2.95 | MC |
| SRR6502089 | leaf | control | 4.37 | MC |
| SRR6502090 | leaf | control | 2.36 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 3.50 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 3.70 | MC |
| SRR6502102 | leaf | control | 3.70 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 3.35 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 3.19 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 2.61 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 5.88 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 2.36 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 4.74 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 1.35 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 3.23 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 4.30 | MC |
| SRR6168973 | leaf | none (control) | 2.01 | MC |
| SRR6168974 | leaf | none (control) | 3.70 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 6.42 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 4.04 | MC |
| SRR8582888 | panicle | AM | 0.98 | MC |
| SRR8582889 | panicle | AM | 0.88 | MC |
| SRR8582890 | panicle | AM | 0.63 | MC |
| SRR8582891 | panicle | PM | 1.25 | MC |
| SRR8582892 | panicle | PM | 1.59 | MC |
| SRR8582893 | panicle | PM | 1.68 | MC |
| SRR5110430 | panicle | Dawn | 3.28 | MC |
| SRR5110431 | panicle | Dawn | 4.11 | MC |
| SRR5110432 | panicle | Dawn | 2.93 | MC |
| SRR4947496 | root | control | 3.29 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 4.35 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 4.09 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 2.83 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 3.25 | MC |
| SRR5110437 | panicle | Dawn + 7h | 4.14 | MC |
| SRR5110439 | panicle | Dawn + 7h | 3.76 | MC |
| SRR5110440 | panicle | Dawn + 7h | 3.54 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 2.25 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 3.39 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 3.30 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 3.02 | MC |
| SRR5110446 | panicle | Dusk | 3.20 | MC |
| SRR5110447 | panicle | Dusk | 4.02 | MC |
| SRR5110448 | panicle | Dusk | 3.66 | MC |
| SRR5110449 | panicle | Dawn + 14h | 2.87 | MC |
| SRR5110450 | panicle | Dawn + 14h | 2.78 | MC |
| SRR5110452 | panicle | Dawn + 14h | 3.71 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 3.83 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 3.06 | MC |
| SRR5110457 | panicle | Dawn + 21h | 2.41 | MC |
| SRR5110458 | panicle | Dawn + 21h | 2.86 | MC |
| SRR5110459 | panicle | Dawn + 21h | 3.49 | MC |
| SRR5110460 | panicle | Dawn + 21h | 3.97 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 2.15 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.72 | MC |
| SRR4947484 | root | Al | 3.66 | MC |
| SRR4947490 | root | Al | 4.08 | MC |
| SRR4947492 | root | Al | 5.28 | MC |
| SRR4947493 | root | Al | 3.05 | MC |
| SRR4947497 | root | control | 4.81 | MC |
| SRR4947498 | root | Al | 3.86 | MC |
| SRR4947499 | root | Al | 4.03 | MC |
| SRR4947500 | root | Al | 4.17 | MC |
| SRR4947501 | root | Al | 5.61 | MC |
| SRR4947502 | root | control | 3.06 | MC |
| SRR4947503 | root | control | 3.30 | MC |
| SRR4947506 | root | Al | 3.04 | MC |
| SRR4947507 | root | Al | 2.82 | MC |
| SRR4947508 | root | Al | 3.21 | MC |
| SRR6502095 | root | control | 4.72 | MC |
| SRR6502096 | root | control | 2.65 | MC |
| SRR6502103 | root | 100 mM NaCl | 4.60 | MC |
| SRR6502107 | root | control | 3.99 | MC |
| SRR1740436 | root_differentiation_zone | wt | 2.86 | MC |
| SRR1740432 | root_elongation_zone | wt | 3.56 | MC |
| SRR1740433 | root_elongation_zone | wt | 2.29 | MC |
| SRR1740428 | root_meristematic_zone | wt | 4.31 | MC |
| SRR1740429 | root_meristematic_zone | wt | 2.15 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.18 | MC |
| SRR6441554 | seedling | wild_type | 1.07 | MC |
| SRR6441555 | seedling | wild_type | 1.70 | MC |
| SRR2154083 | seedling | wt | 3.00 | MC |
| SRR3098742 | seedling | wt | 1.02 | MC |
| SRR3098743 | seedling | wt | 1.70 | MC |
| SRR2857719 | seedling | drought_stress_0h | 3.58 | MC |
| SRR1944583 | seedling | no_treatment | 1.87 | MC |
| SRR358792 | seedling | wt | 7.32 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.34 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.04 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 8.50 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.10 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.81 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.01 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.52 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.54 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.73 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.40 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.28 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.64 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.97 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.10 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.57 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.67 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 2.21 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.82 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.52 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.32 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 2.66 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 2.47 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 3.28 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 5.97 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 2.03 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 3.04 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 5.55 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 2.15 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 3.28 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.98 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.54 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 2.63 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 4.12 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 2.09 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 2.99 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 5.17 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 4.05 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 4.17 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 3.98 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.72 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 2.51 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 2.74 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 5.00 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 2.14 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 3.10 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 4.69 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 5.36 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 2.49 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 3.25 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.66 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.99 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 2.16 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.58 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.70 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.58 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 2.14 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.81 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.02 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 2.47 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.95 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.79 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.35 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.83 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.85 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.61 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.68 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.29 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.95 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.00 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.98 | MC |