| SRR4457254 | 2nd_leaf | DAH12 | 0.71 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.37 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.01 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 1.17 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.79 | MC |
| SRR5560729 | caryopsis | wild_type | 0.48 | MC |
| SRR7265401 | coleoptile | 2dA | 0.56 | MC |
| SRR7265402 | coleoptile | 2dA | 0.61 | MC |
| SRR7265403 | coleoptile | 2dN | 1.18 | MC |
| SRR7265404 | coleoptile | 2dN | 1.68 | MC |
| SRR7265405 | coleoptile | 2dN | 0.81 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.40 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.44 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.80 | MC |
| SRR7265376 | embryo | 1hA | 0.59 | MC |
| SRR7265388 | embryo | 12hA | 1.43 | MC |
| SRR7265392 | embryo | 12hN | 1.79 | MC |
| SRR7265397 | embryo | 24hN | 2.79 | MC |
| SRR7265398 | embryo | 24hN | 1.76 | MC |
| SRR7265399 | embryo | 24hN | 1.86 | MC |
| SRR4457242 | flag_leaf | DAH28 | 1.55 | MC |
| SRR4457248 | flag_leaf | DAH44 | 2.50 | MC |
| SRR1213691 | flower | wt | 0.41 | MC |
| SRR8060837 | leaf | wild_type | 0.21 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.07 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.91 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.95 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.59 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.90 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.82 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.10 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.69 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.12 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.56 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.25 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 1.92 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 0.88 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.50 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.95 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.06 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.45 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.16 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.67 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.65 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.07 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.36 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.84 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.95 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 2.72 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.08 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 4.36 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.08 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 4.36 | MC |
| SRR1761529 | leaf | drought | 1.08 | MC |
| SRR1761531 | leaf | control | 4.36 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.53 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.89 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.07 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 2.33 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.34 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.79 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.26 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.24 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.89 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.24 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.84 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.65 | MC |
| SRR6502102 | leaf | control | 0.36 | MC |
| SRR5856935 | leaf | control | 0.29 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 3.76 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 0.89 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.63 | MC |
| SRR8582888 | panicle | AM | 0.67 | MC |
| SRR8582890 | panicle | AM | 0.30 | MC |
| SRR8582893 | panicle | PM | 0.32 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.45 | MC |
| SRR5110437 | panicle | Dawn + 7h | 3.32 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.52 | MC |
| SRR5110440 | panicle | Dawn + 7h | 5.06 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.69 | MC |
| SRR5110445 | panicle | Dusk | 0.46 | MC |
| SRR5110446 | panicle | Dusk | 1.84 | MC |
| SRR5110447 | panicle | Dusk | 0.33 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.97 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.74 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.55 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.67 | MC |
| SRR5110460 | panicle | Dawn + 21h | 4.48 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.54 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.49 | MC |
| SRR5126147 | root | "mock,1_day" | 0.48 | MC |
| SRR5126148 | root | "mock,1_day" | 0.38 | MC |
| SRR5126149 | root | "mock,1_day" | 0.66 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.85 | MC |
| SRR5126153 | root | "mock,7_days" | 0.43 | MC |
| SRR5126155 | root | "mock,7_days" | 0.43 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.82 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.73 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.42 | MC |
| SRR5126165 | root | "mock,14_days" | 0.75 | MC |
| SRR5126167 | root | "mock,14_days" | 0.98 | MC |
| SRR5126169 | root | "mock,14_days" | 0.36 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.24 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.71 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 2.00 | MC |
| SRR1213695 | root | wt | 0.32 | MC |
| SRR4947482 | root | Al | 3.51 | MC |
| SRR4947484 | root | Al | 3.83 | MC |
| SRR4947488 | root | control | 3.72 | MC |
| SRR4947490 | root | Al | 0.77 | MC |
| SRR4947494 | root | control | 2.19 | MC |
| SRR4947497 | root | control | 1.43 | MC |
| SRR4947498 | root | Al | 3.58 | MC |
| SRR4947499 | root | Al | 2.42 | MC |
| SRR4947500 | root | Al | 1.00 | MC |
| SRR4947503 | root | control | 3.43 | MC |
| SRR4947504 | root | control | 1.32 | MC |
| SRR4947506 | root | Al | 1.12 | MC |
| SRR4947509 | root | Al | 2.76 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.82 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.78 | MC |
| SRR6502094 | root | control | 1.34 | MC |
| SRR6502095 | root | control | 1.90 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.42 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.50 | MC |
| SRR6502108 | root | control | 0.86 | MC |
| SRR1740436 | root_differentiation_zone | wt | 2.10 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.31 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.29 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.30 | MC |
| SRR6441554 | seedling | wild_type | 0.22 | MC |
| SRR2154082 | seedling | wt | 0.60 | MC |
| SRR2154083 | seedling | wt | 0.40 | MC |
| SRR2154084 | seedling | wt | 0.62 | MC |
| SRR2154087 | seedling | wt | 2.62 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 1.09 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.06 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.63 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.20 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.58 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.82 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.12 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.63 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.61 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.25 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.70 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.37 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.01 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 0.57 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.57 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 4.10 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.07 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.34 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.31 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.87 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.41 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.77 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 2.75 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.75 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.56 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.24 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 2.76 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 0.78 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.43 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.76 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.25 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.29 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.48 | MC |