| SRR358796 | callus | wt | 1.48 | MC |
| SRR358797 | callus | wt | 1.29 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.56 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.55 | MC |
| SRR7265400 | coleoptile | 2dA | 1.44 | MC |
| SRR7265401 | coleoptile | 2dA | 1.82 | MC |
| SRR7265402 | coleoptile | 2dA | 1.52 | MC |
| SRR7265403 | coleoptile | 2dN | 2.33 | MC |
| SRR7265404 | coleoptile | 2dN | 0.79 | MC |
| SRR7265405 | coleoptile | 2dN | 1.27 | MC |
| SRR7265406 | coleoptile | 3dA | 0.61 | MC |
| SRR7265407 | coleoptile | 3dA | 0.49 | MC |
| SRR7265408 | coleoptile | 3dA | 0.42 | MC |
| SRR7265409 | coleoptile | 3dN | 1.04 | MC |
| SRR7265410 | coleoptile | 3dN | 0.48 | MC |
| SRR7265411 | coleoptile | 3dN | 0.65 | MC |
| SRR7265415 | coleoptile | 4dN | 1.60 | MC |
| SRR7265416 | coleoptile | 4dN | 1.03 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.42 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.29 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.94 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.41 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.56 | MC |
| SRR7265374 | embryo | dry seed 0 h | 2.12 | MC |
| SRR7265376 | embryo | 1hA | 0.47 | MC |
| SRR7265377 | embryo | 1hA | 0.36 | MC |
| SRR7265378 | embryo | 1hA | 0.51 | MC |
| SRR7265379 | embryo | 1hN | 0.47 | MC |
| SRR7265381 | embryo | 1hN | 0.54 | MC |
| SRR7265382 | embryo | 3hA | 0.41 | MC |
| SRR7265383 | embryo | 3hA | 0.58 | MC |
| SRR7265386 | embryo | 3hN | 0.84 | MC |
| SRR7265387 | embryo | 3hN | 0.32 | MC |
| SRR7265388 | embryo | 12hA | 0.48 | MC |
| SRR7265389 | embryo | 12hA | 1.52 | MC |
| SRR7265390 | embryo | 12hA | 2.09 | MC |
| SRR7265391 | embryo | 12hN | 1.45 | MC |
| SRR7265392 | embryo | 12hN | 1.27 | MC |
| SRR7265393 | embryo | 12hN | 3.16 | MC |
| SRR7265394 | embryo | 24hA | 2.07 | MC |
| SRR7265395 | embryo | 24hA | 1.14 | MC |
| SRR7265396 | embryo | 24hA | 1.18 | MC |
| SRR7265397 | embryo | 24hN | 1.13 | MC |
| SRR7265398 | embryo | 24hN | 0.83 | MC |
| SRR7265399 | embryo | 24hN | 1.75 | MC |
| SRR1213691 | flower | wt | 1.58 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.17 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.22 | MC |
| SRR6168981 | leaf | none (control) | 0.35 | MC |
| SRR5110429 | panicle | Dawn | 1.43 | MC |
| SRR5110430 | panicle | Dawn | 1.96 | MC |
| SRR5110431 | panicle | Dawn | 0.73 | MC |
| SRR5110432 | panicle | Dawn | 1.78 | MC |
| SRR4947496 | root | control | 0.96 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 2.37 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.66 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.71 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.23 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.09 | MC |
| SRR5110440 | panicle | Dawn + 7h | 0.82 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.42 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.47 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.51 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 0.58 | MC |
| SRR5110445 | panicle | Dusk | 0.64 | MC |
| SRR5110446 | panicle | Dusk | 1.38 | MC |
| SRR5110447 | panicle | Dusk | 0.76 | MC |
| SRR5110448 | panicle | Dusk | 0.61 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.12 | MC |
| SRR5110450 | panicle | Dawn + 14h | 0.88 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.08 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.43 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.68 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.01 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.91 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.79 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.38 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.79 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.66 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.59 | MC |
| SRR1633182 | panicle | WT | 0.42 | MC |
| SRR1633185 | panicle | WT | 0.41 | MC |
| SRR5126147 | root | "mock,1_day" | 0.54 | MC |
| SRR5126148 | root | "mock,1_day" | 0.72 | MC |
| SRR5126149 | root | "mock,1_day" | 0.45 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.53 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.90 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.33 | MC |
| SRR5126153 | root | "mock,7_days" | 0.58 | MC |
| SRR5126157 | root | "mock,7_days" | 0.81 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.69 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.12 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.15 | MC |
| SRR5126169 | root | "mock,14_days" | 0.45 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.43 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.85 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.77 | MC |
| SRR4947488 | root | control | 0.56 | MC |
| SRR4947489 | root | control | 0.98 | MC |
| SRR4947509 | root | Al | 0.69 | MC |
| SRR6502103 | root | 100 mM NaCl | 3.52 | MC |
| SRR6502104 | root | 100 mM NaCl | 2.53 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.23 | MC |
| SRR6502107 | root | control | 1.08 | MC |
| SRR6502108 | root | control | 2.34 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.40 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.64 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.95 | MC |
| SRR1740432 | root_elongation_zone | wt | 2.29 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.09 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.26 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.42 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 3.20 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.81 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.66 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.72 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.33 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.35 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 3.88 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.15 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.25 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.46 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.29 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.43 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.74 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.85 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.59 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.61 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 0.79 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.82 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.65 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 0.54 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.31 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.39 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.93 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.77 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.16 | MC |