| SRR4457249 | 2nd_leaf | DAH4 | 2.32 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 2.72 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.82 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 2.31 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.75 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 1.37 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 3.35 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 2.28 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 2.62 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.54 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.97 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 2.30 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 3.97 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 4.32 | MC |
| SRR5560727 | caryopsis | wild_type | 1.15 | MC |
| SRR5560728 | caryopsis | wild_type | 1.82 | MC |
| SRR5560729 | caryopsis | wild_type | 1.62 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.59 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.55 | MC |
| SRR7265400 | coleoptile | 2dA | 1.05 | MC |
| SRR7265401 | coleoptile | 2dA | 1.55 | MC |
| SRR7265402 | coleoptile | 2dA | 1.35 | MC |
| SRR7265403 | coleoptile | 2dN | 0.61 | MC |
| SRR7265404 | coleoptile | 2dN | 0.32 | MC |
| SRR7265405 | coleoptile | 2dN | 0.81 | MC |
| SRR7265406 | coleoptile | 3dA | 2.23 | MC |
| SRR7265407 | coleoptile | 3dA | 3.16 | MC |
| SRR7265408 | coleoptile | 3dA | 1.37 | MC |
| SRR7265409 | coleoptile | 3dN | 1.64 | MC |
| SRR7265410 | coleoptile | 3dN | 0.98 | MC |
| SRR7265411 | coleoptile | 3dN | 0.62 | MC |
| SRR7265413 | coleoptile | 4dA | 4.19 | MC |
| SRR7265414 | coleoptile | 4dA | 3.37 | MC |
| SRR7265415 | coleoptile | 4dN | 1.38 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.16 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 2.93 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.57 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.98 | MC |
| SRR7265388 | embryo | 12hA | 0.72 | MC |
| SRR7265391 | embryo | 12hN | 1.02 | MC |
| SRR7265394 | embryo | 24hA | 0.76 | MC |
| SRR7265395 | embryo | 24hA | 0.67 | MC |
| SRR7265396 | embryo | 24hA | 0.76 | MC |
| SRR2338866 | endosprem | control | 1.86 | MC |
| SRR4457231 | flag_leaf | DAH4 | 1.52 | MC |
| SRR4457232 | flag_leaf | DAH4 | 1.04 | MC |
| SRR4457233 | flag_leaf | DAH4 | 1.38 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.06 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.18 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.59 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.77 | MC |
| SRR4457238 | flag_leaf | DAH20 | 1.44 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.73 | MC |
| SRR4457240 | flag_leaf | DAH28 | 2.31 | MC |
| SRR4457241 | flag_leaf | DAH28 | 2.68 | MC |
| SRR4457242 | flag_leaf | DAH28 | 3.49 | MC |
| SRR4457243 | flag_leaf | DAH36 | 2.60 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.35 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.39 | MC |
| SRR4457246 | flag_leaf | DAH44 | 4.24 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.03 | MC |
| SRR1213691 | flower | wt | 1.11 | MC |
| SRR8060836 | leaf | wild_type | 0.47 | MC |
| SRR8060837 | leaf | wild_type | 0.54 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.99 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.11 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.09 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.99 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.35 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.62 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.62 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.39 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.90 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.63 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.61 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.03 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.74 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.92 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.18 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.04 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.58 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.06 | MC |
| SRR504365 | leaf | wt | 2.76 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.31 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.39 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 3.26 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.89 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 1.55 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.43 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.56 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.64 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.30 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.45 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.51 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.55 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.13 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.19 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.61 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.61 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.47 | MC |
| SRR1213692 | leaf | wt | 0.38 | MC |
| SRR1213693 | leaf | wt | 1.93 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.38 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.95 | MC |
| SRR6502088 | leaf | control | 0.86 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.86 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.41 | MC |
| SRR6502100 | leaf | control | 0.47 | MC |
| SRR6502101 | leaf | control | 0.53 | MC |
| SRR5856928 | leaf | control | 0.51 | MC |
| SRR5856930 | leaf | salt | 0.91 | MC |
| SRR5856931 | leaf | salt | 0.66 | MC |
| SRR5856932 | leaf | salt | 0.81 | MC |
| SRR5856933 | leaf | control | 0.67 | MC |
| SRR5856935 | leaf | control | 1.14 | MC |
| SRR5856936 | leaf | salt | 0.60 | MC |
| SRR5856937 | leaf | salt | 1.06 | MC |
| SRR5856938 | leaf | salt | 1.29 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 1.23 | MC |
| SRR6168973 | leaf | none (control) | 0.63 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.39 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.36 | MC |
| SRR6168981 | leaf | none (control) | 0.42 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.39 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.32 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.85 | MC |
| SRR8582893 | panicle | PM | 0.50 | MC |
| SRR5110429 | panicle | Dawn | 1.09 | MC |
| SRR5110430 | panicle | Dawn | 3.69 | MC |
| SRR5110431 | panicle | Dawn | 1.16 | MC |
| SRR5110432 | panicle | Dawn | 1.03 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 0.98 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.36 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.47 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.99 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.96 | MC |
| SRR5110439 | panicle | Dawn + 7h | 3.17 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 0.58 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.24 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.28 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.52 | MC |
| SRR5110445 | panicle | Dusk | 1.45 | MC |
| SRR5110446 | panicle | Dusk | 1.31 | MC |
| SRR5110447 | panicle | Dusk | 0.71 | MC |
| SRR5110449 | panicle | Dawn + 14h | 2.07 | MC |
| SRR5110450 | panicle | Dawn + 14h | 2.94 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.50 | MC |
| SRR5110452 | panicle | Dawn + 14h | 2.53 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.53 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.47 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.23 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.05 | MC |
| SRR5110460 | panicle | Dawn + 21h | 2.08 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.63 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.06 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.91 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.41 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.63 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.50 | MC |
| SRR5126153 | root | "mock,7_days" | 0.71 | MC |
| SRR5126155 | root | "mock,7_days" | 0.97 | MC |
| SRR5126157 | root | "mock,7_days" | 1.38 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.37 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.94 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.57 | MC |
| SRR5126165 | root | "mock,14_days" | 1.29 | MC |
| SRR5126167 | root | "mock,14_days" | 1.33 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.94 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.59 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.61 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.70 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.76 | MC |
| SRR1213694 | root | wt | 1.41 | MC |
| SRR1213695 | root | wt | 2.07 | MC |
| SRR4947481 | root | control | 1.28 | MC |
| SRR4947482 | root | Al | 0.54 | MC |
| SRR4947485 | root | Al | 0.93 | MC |
| SRR4947497 | root | control | 1.58 | MC |
| SRR4947501 | root | Al | 1.65 | MC |
| SRR4947505 | root | control | 0.90 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.55 | MC |
| SRR6502107 | root | control | 0.37 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.83 | MC |
| SRR6441554 | seedling | wild_type | 0.25 | MC |
| SRR6441555 | seedling | wild_type | 0.64 | MC |
| SRR2154086 | seedling | wt | 1.53 | MC |
| SRR2154082 | seedling | wt | 0.89 | MC |
| SRR2154083 | seedling | wt | 1.11 | MC |
| SRR2154084 | seedling | wt | 1.33 | MC |
| SRR2154085 | seedling | wt | 2.08 | MC |
| SRR2154087 | seedling | wt | 1.02 | MC |
| SRR3098741 | seedling | wt | 0.48 | MC |
| SRR3098742 | seedling | wt | 0.25 | MC |
| SRR3098743 | seedling | wt | 0.20 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.42 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.92 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.01 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 1.69 | MC |
| SRR1944583 | seedling | no_treatment | 0.73 | MC |
| SRR358792 | seedling | wt | 2.74 | MC |
| SRR358793 | seedling | wt | 4.88 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.27 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.69 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.10 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.61 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.14 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.73 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.76 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 1.54 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 1.34 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.33 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 3.28 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.78 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.70 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.72 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.56 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.45 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.09 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.99 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.39 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.73 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.63 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.88 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 3.16 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.33 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.29 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.82 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.41 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.68 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.19 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.55 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.37 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.48 | MC |