| SRR6320498 | carpel | wt | 2.11 | MC |
| SRR5560727 | caryopsis | wild_type | 0.36 | MC |
| SRR5560729 | caryopsis | wild_type | 1.24 | MC |
| SRR7265402 | coleoptile | 2dA | 0.41 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.95 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.57 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.56 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.37 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.45 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.67 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.98 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.11 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.51 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.54 | MC |
| SRR8060837 | leaf | wild_type | 0.34 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.40 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.19 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.35 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.61 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.32 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.50 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.50 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.81 | MC |
| SRR5856927 | leaf | control | 0.24 | MC |
| SRR5856928 | leaf | control | 0.33 | MC |
| SRR5856929 | leaf | control | 0.41 | MC |
| SRR5856934 | leaf | control | 0.22 | MC |
| SRR5856938 | leaf | salt | 0.16 | MC |
| SRR6168974 | leaf | none (control) | 0.62 | MC |
| SRR6168975 | leaf | none (control) | 1.55 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.21 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.43 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.52 | MC |
| SRR6168980 | leaf | none (control) | 0.36 | MC |
| SRR6168981 | leaf | none (control) | 1.39 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.52 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.93 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.15 | MC |
| SRR5110432 | panicle | Dawn | 0.69 | MC |
| SRR4947496 | root | control | 0.67 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 2.28 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.54 | MC |
| SRR5110459 | panicle | Dawn + 21h | 2.61 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.22 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.58 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.41 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.45 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.61 | MC |
| SRR5126147 | root | "mock,1_day" | 0.47 | MC |
| SRR5126148 | root | "mock,1_day" | 2.14 | MC |
| SRR5126149 | root | "mock,1_day" | 1.18 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.23 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.89 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.42 | MC |
| SRR5126153 | root | "mock,7_days" | 0.65 | MC |
| SRR5126165 | root | "mock,14_days" | 0.56 | MC |
| SRR5126167 | root | "mock,14_days" | 0.48 | MC |
| SRR5126169 | root | "mock,14_days" | 0.46 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.85 | MC |
| SRR4947479 | root | control | 0.87 | MC |
| SRR4947489 | root | control | 0.72 | MC |
| SRR4947505 | root | control | 0.81 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.45 | MC |
| SRR6502095 | root | control | 0.93 | MC |
| SRR6502096 | root | control | 0.76 | MC |
| SRR6502106 | root | control | 0.83 | MC |
| SRR6502107 | root | control | 1.33 | MC |
| SRR1740434 | root_differentiation_zone | wt | 2.02 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.75 | MC |
| SRR1740436 | root_differentiation_zone | wt | 2.16 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.37 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.77 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.75 | MC |
| SRR6441554 | seedling | wild_type | 0.26 | MC |
| SRR6441555 | seedling | wild_type | 0.26 | MC |
| SRR3098741 | seedling | wt | 0.32 | MC |
| SRR3098742 | seedling | wt | 0.42 | MC |
| SRR3098743 | seedling | wt | 0.52 | MC |
| SRR1944583 | seedling | no_treatment | 0.70 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.90 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.28 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.43 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 0.73 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.50 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.23 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.12 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.66 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.49 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.70 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.94 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.37 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.11 | MC |