| SRR358795 | callus | wt | 1.96 | MC |
| SRR358796 | callus | wt | 2.01 | MC |
| SRR358797 | callus | wt | 1.67 | MC |
| SRR358798 | callus | wt | 2.67 | MC |
| SRR5560727 | caryopsis | wild_type | 0.79 | MC |
| SRR5560728 | caryopsis | wild_type | 0.77 | MC |
| SRR5560729 | caryopsis | wild_type | 1.60 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.67 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.50 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.42 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.79 | MC |
| SRR7265373 | embryo | dry seed 0 h | 3.39 | MC |
| SRR7265374 | embryo | dry seed 0 h | 2.00 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.39 | MC |
| SRR7265377 | embryo | 1hA | 3.50 | MC |
| SRR7265379 | embryo | 1hN | 3.38 | MC |
| SRR7265380 | embryo | 1hN | 2.50 | MC |
| SRR7265381 | embryo | 1hN | 3.04 | MC |
| SRR7265394 | embryo | 24hA | 3.85 | MC |
| SRR7265395 | embryo | 24hA | 5.02 | MC |
| SRR976168 | flag_leaf | wild_type | 0.64 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.36 | MC |
| SRR1213691 | flower | wt | 0.35 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.80 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.41 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.82 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.00 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.40 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.60 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.44 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.44 | MC |
| SRR1761529 | leaf | drought | 0.44 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.50 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.32 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.57 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.42 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.38 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.37 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.38 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.24 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.53 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.81 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.53 | MC |
| SRR6168973 | leaf | none (control) | 0.31 | MC |
| SRR6168974 | leaf | none (control) | 0.71 | MC |
| SRR5110432 | panicle | Dawn | 0.40 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.30 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.72 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.24 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.75 | MC |
| SRR6441554 | seedling | wild_type | 1.13 | MC |
| SRR6441555 | seedling | wild_type | 0.44 | MC |
| SRR2154086 | seedling | wt | 0.41 | MC |
| SRR2154082 | seedling | wt | 0.47 | MC |
| SRR2154083 | seedling | wt | 0.44 | MC |
| SRR2154085 | seedling | wt | 0.57 | MC |
| SRR3098742 | seedling | wt | 0.28 | MC |
| SRR3098743 | seedling | wt | 0.33 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.43 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.10 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.47 | MC |
| SRR1944583 | seedling | no_treatment | 0.65 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.58 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.02 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.83 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.35 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.11 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.97 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.26 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.19 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.20 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.01 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.58 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.46 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.66 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.71 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.46 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.75 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.73 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.56 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.36 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.57 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.43 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 0.62 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.33 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.66 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.39 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.40 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.97 | MC |