| SRR6320498 | carpel | wt | 2.47 | MC |
| SRR5560727 | caryopsis | wild_type | 1.10 | MC |
| SRR5560728 | caryopsis | wild_type | 0.61 | MC |
| SRR5560729 | caryopsis | wild_type | 1.36 | MC |
| SRR7265400 | coleoptile | 2dA | 0.80 | MC |
| SRR7265402 | coleoptile | 2dA | 0.87 | MC |
| SRR7265403 | coleoptile | 2dN | 1.52 | MC |
| SRR7265405 | coleoptile | 2dN | 0.84 | MC |
| SRR7265410 | coleoptile | 3dN | 0.90 | MC |
| SRR7265411 | coleoptile | 3dN | 0.55 | MC |
| SRR7265417 | coleoptile | 4dN | 0.49 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.38 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.23 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.76 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.44 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.33 | MC |
| SRR7265374 | embryo | dry seed 0 h | 3.52 | MC |
| SRR7265376 | embryo | 1hA | 1.28 | MC |
| SRR7265377 | embryo | 1hA | 1.18 | MC |
| SRR7265378 | embryo | 1hA | 1.27 | MC |
| SRR7265379 | embryo | 1hN | 1.54 | MC |
| SRR7265380 | embryo | 1hN | 0.92 | MC |
| SRR7265381 | embryo | 1hN | 0.86 | MC |
| SRR7265382 | embryo | 3hA | 1.79 | MC |
| SRR7265384 | embryo | 3hA | 1.31 | MC |
| SRR7265386 | embryo | 3hN | 0.68 | MC |
| SRR7265387 | embryo | 3hN | 2.06 | MC |
| SRR7265388 | embryo | 12hA | 1.35 | MC |
| SRR7265391 | embryo | 12hN | 1.10 | MC |
| SRR7265393 | embryo | 12hN | 0.47 | MC |
| SRR7265395 | embryo | 24hA | 0.97 | MC |
| SRR7265396 | embryo | 24hA | 1.20 | MC |
| SRR7265398 | embryo | 24hN | 1.25 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.56 | MC |
| SRR1213691 | flower | wt | 1.06 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.44 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.24 | MC |
| SRR5856934 | leaf | control | 0.23 | MC |
| SRR6168974 | leaf | none (control) | 0.39 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.56 | MC |
| SRR5110431 | panicle | Dawn | 1.18 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.56 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.08 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.79 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 2.30 | MC |
| SRR5110445 | panicle | Dusk | 1.67 | MC |
| SRR5110447 | panicle | Dusk | 1.79 | MC |
| SRR5110448 | panicle | Dusk | 3.43 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.92 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.30 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.20 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.17 | MC |
| SRR1633185 | panicle | WT | 0.61 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.40 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.47 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.41 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.37 | MC |
| SRR5126153 | root | "mock,7_days" | 0.39 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.37 | MC |
| SRR1213695 | root | wt | 0.26 | MC |
| SRR4947497 | root | control | 0.73 | MC |
| SRR6441554 | seedling | wild_type | 0.49 | MC |
| SRR2154086 | seedling | wt | 0.76 | MC |
| SRR2154082 | seedling | wt | 0.70 | MC |
| SRR2154083 | seedling | wt | 0.44 | MC |
| SRR2154084 | seedling | wt | 0.47 | MC |
| SRR2154085 | seedling | wt | 0.58 | MC |
| SRR2154087 | seedling | wt | 0.55 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.41 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.26 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 8.38 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.60 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.59 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.78 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.64 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.79 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.70 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 0.76 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 0.80 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.46 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.88 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.41 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.98 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.85 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.89 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.27 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.93 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.47 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.94 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.05 | MC |