| SRR7265401 | coleoptile | 2dA | 0.45 | MC |
| SRR7265403 | coleoptile | 2dN | 0.51 | MC |
| SRR7265404 | coleoptile | 2dN | 1.12 | MC |
| SRR7265405 | coleoptile | 2dN | 0.67 | MC |
| SRR7265409 | coleoptile | 3dN | 0.91 | MC |
| SRR7265410 | coleoptile | 3dN | 2.14 | MC |
| SRR7265411 | coleoptile | 3dN | 1.27 | MC |
| SRR7265412 | coleoptile | 4dA | 1.95 | MC |
| SRR7265417 | coleoptile | 4dN | 2.06 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.93 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.39 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.61 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.38 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.50 | MC |
| SRR7265376 | embryo | 1hA | 1.78 | MC |
| SRR7265377 | embryo | 1hA | 1.12 | MC |
| SRR7265378 | embryo | 1hA | 1.65 | MC |
| SRR7265379 | embryo | 1hN | 1.00 | MC |
| SRR7265380 | embryo | 1hN | 1.04 | MC |
| SRR7265381 | embryo | 1hN | 1.20 | MC |
| SRR7265382 | embryo | 3hA | 2.31 | MC |
| SRR7265384 | embryo | 3hA | 1.93 | MC |
| SRR7265385 | embryo | 3hN | 3.10 | MC |
| SRR7265392 | embryo | 12hN | 1.50 | MC |
| SRR7265396 | embryo | 24hA | 1.06 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.20 | MC |
| SRR8060835 | leaf | wild_type | 0.33 | MC |
| SRR8060837 | leaf | wild_type | 0.30 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.28 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.44 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.34 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.47 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 0.90 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.54 | MC |
| SRR504365 | leaf | wt | 0.42 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.37 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.63 | MC |
| SRR6417967 | leaf | H2O_control | 0.49 | MC |
| SRR6417968 | leaf | H2O_control | 0.37 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.61 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.32 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.27 | MC |
| SRR5856933 | leaf | control | 1.68 | MC |
| SRR5856934 | leaf | control | 0.96 | MC |
| SRR5856935 | leaf | control | 2.39 | MC |
| SRR5856936 | leaf | salt | 0.79 | MC |
| SRR5856937 | leaf | salt | 0.83 | MC |
| SRR5856938 | leaf | salt | 0.98 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 5.14 | MC |
| SRR6168974 | leaf | none (control) | 0.69 | MC |
| SRR6168979 | leaf | none (control) | 0.85 | MC |
| SRR6168980 | leaf | none (control) | 0.47 | MC |
| SRR6168981 | leaf | none (control) | 1.53 | MC |
| SRR5110430 | panicle | Dawn | 4.63 | MC |
| SRR5110431 | panicle | Dawn | 4.02 | MC |
| SRR5110439 | panicle | Dawn + 7h | 5.53 | MC |
| SRR5110460 | panicle | Dawn + 21h | 4.36 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.31 | MC |
| SRR5126147 | root | "mock,1_day" | 0.34 | MC |
| SRR5126148 | root | "mock,1_day" | 0.45 | MC |
| SRR5126149 | root | "mock,1_day" | 0.43 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.42 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.33 | MC |
| SRR5126153 | root | "mock,7_days" | 0.29 | MC |
| SRR5126157 | root | "mock,7_days" | 0.59 | MC |
| SRR5126165 | root | "mock,14_days" | 0.51 | MC |
| SRR5126167 | root | "mock,14_days" | 0.41 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.14 | MC |
| SRR4947480 | root | control | 3.08 | MC |
| SRR4947481 | root | control | 4.29 | MC |
| SRR4947482 | root | Al | 2.70 | MC |
| SRR4947483 | root | Al | 3.99 | MC |
| SRR4947484 | root | Al | 4.36 | MC |
| SRR4947485 | root | Al | 4.49 | MC |
| SRR4947491 | root | Al | 3.75 | MC |
| SRR4947492 | root | Al | 2.78 | MC |
| SRR4947493 | root | Al | 4.29 | MC |
| SRR4947494 | root | control | 2.25 | MC |
| SRR4947497 | root | control | 3.61 | MC |
| SRR4947500 | root | Al | 4.81 | MC |
| SRR4947501 | root | Al | 4.99 | MC |
| SRR4947505 | root | control | 5.53 | MC |
| SRR4947507 | root | Al | 5.04 | MC |
| SRR4947509 | root | Al | 2.78 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.26 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.26 | MC |
| SRR3098741 | seedling | wt | 0.25 | MC |
| SRR3098743 | seedling | wt | 0.16 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.36 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.38 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.55 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.87 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.37 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 11.65 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.80 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.10 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.63 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.67 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.32 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.40 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.13 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.43 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.66 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.68 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 3.97 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 3.63 | MC |