| SRR4457250 | 2nd_leaf | DAH4 | 0.72 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.26 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.69 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.27 | MC |
| SRR4947495 | root | control | 2.30 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.48 | MC |
| SRR7265377 | embryo | 1hA | 0.64 | MC |
| SRR7265378 | embryo | 1hA | 0.53 | MC |
| SRR7265379 | embryo | 1hN | 0.56 | MC |
| SRR7265380 | embryo | 1hN | 0.44 | MC |
| SRR7265381 | embryo | 1hN | 0.45 | MC |
| SRR7265383 | embryo | 3hA | 0.44 | MC |
| SRR7265387 | embryo | 3hN | 0.36 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.30 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.23 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.65 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.29 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.89 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.46 | MC |
| SRR8060835 | leaf | wild_type | 0.21 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.86 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.68 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.44 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.52 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.62 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.96 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.36 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.40 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.84 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 0.73 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.35 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.25 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.93 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.59 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.55 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.32 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.10 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.75 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.39 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.41 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 0.60 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.46 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.48 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.57 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.73 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.96 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.45 | MC |
| SRR1761528 | leaf | drought | 1.32 | MC |
| SRR1761529 | leaf | drought | 0.92 | MC |
| SRR1761530 | leaf | control | 0.60 | MC |
| SRR1761531 | leaf | control | 0.55 | MC |
| SRR504365 | leaf | wt | 0.23 | MC |
| SRR6417969 | leaf | H2O_control | 0.66 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.31 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.24 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.79 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.13 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.22 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.36 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.86 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.85 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.29 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.57 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.22 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.43 | MC |
| SRR1213692 | leaf | wt | 0.72 | MC |
| SRR1213693 | leaf | wt | 0.99 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.51 | MC |
| SRR6502101 | leaf | control | 0.33 | MC |
| SRR5856933 | leaf | control | 0.49 | MC |
| SRR5856934 | leaf | control | 0.38 | MC |
| SRR5856935 | leaf | control | 0.34 | MC |
| SRR5856936 | leaf | salt | 0.14 | MC |
| SRR5856937 | leaf | salt | 0.13 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 2.97 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 1.51 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 2.10 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 1.26 | MC |
| SRR8582888 | panicle | AM | 0.33 | MC |
| SRR8582889 | panicle | AM | 0.29 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.53 | MC |
| SRR5110440 | panicle | Dawn + 7h | 0.62 | MC |
| SRR5110446 | panicle | Dusk | 0.43 | MC |
| SRR5110447 | panicle | Dusk | 0.38 | MC |
| SRR5110448 | panicle | Dusk | 0.58 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.33 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.79 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.52 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.16 | MC |
| SRR1633182 | panicle | WT | 0.55 | MC |
| SRR1633185 | panicle | WT | 0.77 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.39 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.38 | MC |
| SRR1213695 | root | wt | 1.16 | MC |
| SRR4947478 | root | control | 3.59 | MC |
| SRR4947479 | root | control | 1.96 | MC |
| SRR4947482 | root | Al | 3.50 | MC |
| SRR4947483 | root | Al | 1.86 | MC |
| SRR4947487 | root | control | 2.26 | MC |
| SRR4947490 | root | Al | 2.90 | MC |
| SRR4947491 | root | Al | 2.14 | MC |
| SRR4947494 | root | control | 3.39 | MC |
| SRR4947498 | root | Al | 3.38 | MC |
| SRR4947499 | root | Al | 3.74 | MC |
| SRR4947502 | root | control | 2.47 | MC |
| SRR4947503 | root | control | 3.70 | MC |
| SRR4947506 | root | Al | 2.67 | MC |
| SRR4947507 | root | Al | 3.86 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.24 | MC |
| SRR2154082 | seedling | wt | 0.34 | MC |
| SRR2154084 | seedling | wt | 0.79 | MC |
| SRR2154087 | seedling | wt | 0.45 | MC |
| SRR358791 | seedling | wt | 1.46 | MC |
| SRR358793 | seedling | wt | 0.52 | MC |
| SRR358794 | seedling | wt | 0.62 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.12 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.65 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 6.55 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.04 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.71 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.30 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.35 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.21 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.22 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.43 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.30 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.40 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.92 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.42 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.68 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.39 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.26 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.42 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.40 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.51 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.52 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.39 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.36 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.31 | MC |