| SRR4457251 | 2nd_leaf | DAH4 | 0.34 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 1.48 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 2.39 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.69 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 1.06 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 2.84 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.44 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 2.16 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 4.34 | MC |
| SRR3745125 | anther | wt | 1.15 | MC |
| SRR3745126 | anther | wt | 5.15 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.72 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 3.72 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.41 | MC |
| SRR7265400 | coleoptile | 2dA | 0.29 | MC |
| SRR7265404 | coleoptile | 2dN | 0.41 | MC |
| SRR7265409 | coleoptile | 3dN | 0.40 | MC |
| SRR7265413 | coleoptile | 4dA | 0.57 | MC |
| SRR7265414 | coleoptile | 4dA | 1.00 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.69 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 3.34 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 2.34 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.31 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.36 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 2.70 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 2.74 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.66 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 3.65 | MC |
| SRR7265374 | embryo | dry seed 0 h | 2.90 | MC |
| SRR7265376 | embryo | 1hA | 1.91 | MC |
| SRR7265377 | embryo | 1hA | 2.30 | MC |
| SRR7265378 | embryo | 1hA | 2.65 | MC |
| SRR7265379 | embryo | 1hN | 2.42 | MC |
| SRR7265380 | embryo | 1hN | 2.80 | MC |
| SRR7265381 | embryo | 1hN | 2.93 | MC |
| SRR7265382 | embryo | 3hA | 0.85 | MC |
| SRR7265383 | embryo | 3hA | 0.88 | MC |
| SRR7265384 | embryo | 3hA | 0.94 | MC |
| SRR7265385 | embryo | 3hN | 1.39 | MC |
| SRR7265386 | embryo | 3hN | 2.09 | MC |
| SRR7265387 | embryo | 3hN | 1.37 | MC |
| SRR7265388 | embryo | 12hA | 1.54 | MC |
| SRR7265389 | embryo | 12hA | 0.92 | MC |
| SRR7265390 | embryo | 12hA | 1.02 | MC |
| SRR7265391 | embryo | 12hN | 0.58 | MC |
| SRR7265392 | embryo | 12hN | 0.52 | MC |
| SRR7265393 | embryo | 12hN | 0.81 | MC |
| SRR7265399 | embryo | 24hN | 0.55 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.06 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.27 | MC |
| SRR4457239 | flag_leaf | DAH20 | 2.21 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.90 | MC |
| SRR4457246 | flag_leaf | DAH44 | 3.79 | MC |
| SRR4457247 | flag_leaf | DAH44 | 4.62 | MC |
| SRR8060835 | leaf | wild_type | 0.69 | MC |
| SRR8060836 | leaf | wild_type | 2.91 | MC |
| SRR8060837 | leaf | wild_type | 2.69 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.66 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.99 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.18 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.51 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 6.83 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.23 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.64 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 3.60 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 2.85 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.31 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.94 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.88 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.78 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.56 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.88 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 3.81 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 3.87 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.71 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.71 | MC |
| SRR1761528 | leaf | drought | 1.71 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.43 | MC |
| SRR6417967 | leaf | H2O_control | 1.46 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.81 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 2.17 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 2.34 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.16 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 3.55 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.54 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.46 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.40 | MC |
| SRR6502090 | leaf | control | 3.90 | MC |
| SRR5856927 | leaf | control | 0.75 | MC |
| SRR5856928 | leaf | control | 0.95 | MC |
| SRR5856929 | leaf | control | 0.79 | MC |
| SRR5856932 | leaf | salt | 0.73 | MC |
| SRR5856933 | leaf | control | 1.53 | MC |
| SRR5856934 | leaf | control | 1.58 | MC |
| SRR5856935 | leaf | control | 1.73 | MC |
| SRR5856936 | leaf | salt | 0.74 | MC |
| SRR5856937 | leaf | salt | 0.53 | MC |
| SRR5856938 | leaf | salt | 0.38 | MC |
| SRR6168979 | leaf | none (control) | 0.40 | MC |
| SRR6168980 | leaf | none (control) | 1.10 | MC |
| SRR6168981 | leaf | none (control) | 2.46 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.78 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.63 | MC |
| SRR8582888 | panicle | AM | 1.16 | MC |
| SRR8582892 | panicle | PM | 8.04 | MC |
| SRR8582893 | panicle | PM | 0.43 | MC |
| SRR5110429 | panicle | Dawn | 0.39 | MC |
| SRR5110431 | panicle | Dawn | 0.68 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.66 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.86 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 1.34 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.66 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.14 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.25 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.49 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.78 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 2.26 | MC |
| SRR5110446 | panicle | Dusk | 2.03 | MC |
| SRR5110447 | panicle | Dusk | 1.99 | MC |
| SRR5110448 | panicle | Dusk | 3.54 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.01 | MC |
| SRR5110451 | panicle | Dawn + 14h | 2.00 | MC |
| SRR5110452 | panicle | Dawn + 14h | 2.44 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.13 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.42 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.88 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.30 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.74 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.09 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.21 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 2.24 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 3.16 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.88 | MC |
| SRR5126147 | root | "mock,1_day" | 0.50 | MC |
| SRR5126148 | root | "mock,1_day" | 0.31 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.46 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.55 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.55 | MC |
| SRR5126153 | root | "mock,7_days" | 0.62 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.56 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.75 | MC |
| SRR5126165 | root | "mock,14_days" | 0.95 | MC |
| SRR5126167 | root | "mock,14_days" | 1.12 | MC |
| SRR5126169 | root | "mock,14_days" | 0.56 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.71 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.12 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.69 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.57 | MC |
| SRR1213694 | root | wt | 0.94 | MC |
| SRR4947478 | root | control | 1.87 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.65 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.61 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.66 | MC |
| SRR6502106 | root | control | 0.35 | MC |
| SRR6502108 | root | control | 0.65 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.53 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.75 | MC |
| SRR6441555 | seedling | wild_type | 0.45 | MC |
| SRR2154086 | seedling | wt | 1.80 | MC |
| SRR2154082 | seedling | wt | 0.98 | MC |
| SRR2154083 | seedling | wt | 0.78 | MC |
| SRR2154084 | seedling | wt | 1.26 | MC |
| SRR3098741 | seedling | wt | 1.52 | MC |
| SRR3098742 | seedling | wt | 0.83 | MC |
| SRR3098743 | seedling | wt | 0.84 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.44 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.08 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.95 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 3.02 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.34 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.58 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.62 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.60 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.56 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.90 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.31 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.44 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.54 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.86 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.75 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 7.26 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 6.08 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 7.28 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 8.31 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 7.13 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 6.84 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.20 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 2.67 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.06 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 4.61 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.55 | MC |