| SRR4457258 | 2nd_leaf | DAH28 | 0.46 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.28 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.74 | MC |
| SRR358795 | callus | wt | 2.92 | MC |
| SRR358796 | callus | wt | 2.99 | MC |
| SRR358797 | callus | wt | 4.03 | MC |
| SRR358798 | callus | wt | 1.66 | MC |
| SRR6320473 | carpel | wt | 1.88 | MC |
| SRR6320498 | carpel | wt | 1.96 | MC |
| SRR5560727 | caryopsis | wild_type | 1.09 | MC |
| SRR5560728 | caryopsis | wild_type | 3.19 | MC |
| SRR7265412 | coleoptile | 4dA | 2.44 | MC |
| SRR7265414 | coleoptile | 4dA | 4.05 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 2.09 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 3.92 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 3.75 | MC |
| SRR2338867 | endosprem | control | 1.76 | MC |
| SRR2338868 | endosprem | high_temperature | 1.60 | MC |
| SRR2338869 | endosprem | high_temperature | 0.60 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.60 | MC |
| SRR8060837 | leaf | wild_type | 0.19 | MC |
| SRR8240825 | leaf | wild_type | 0.62 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.36 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.57 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.67 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.60 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.35 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.45 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 1.28 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.64 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.45 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 1.28 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.64 | MC |
| SRR1761529 | leaf | drought | 0.45 | MC |
| SRR1761530 | leaf | control | 1.28 | MC |
| SRR1761531 | leaf | control | 0.64 | MC |
| SRR504365 | leaf | wt | 0.27 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.46 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.15 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.13 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.59 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.77 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.04 | MC |
| SRR8611900 | leaf | Non-inoculated | 3.00 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 2.15 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.72 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 2.96 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.88 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 2.26 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 2.07 | MC |
| SRR6502088 | leaf | control | 2.49 | MC |
| SRR6502089 | leaf | control | 0.99 | MC |
| SRR6502090 | leaf | control | 0.51 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 3.80 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 2.19 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.70 | MC |
| SRR6502100 | leaf | control | 3.17 | MC |
| SRR6502101 | leaf | control | 1.31 | MC |
| SRR6502102 | leaf | control | 2.46 | MC |
| SRR6168973 | leaf | none (control) | 3.38 | MC |
| SRR6168974 | leaf | none (control) | 3.33 | MC |
| SRR6168975 | leaf | none (control) | 2.88 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 3.71 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 2.96 | MC |
| SRR6168980 | leaf | none (control) | 0.49 | MC |
| SRR6168981 | leaf | none (control) | 2.01 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.70 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 2.03 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 2.09 | MC |
| SRR8582890 | panicle | AM | 0.84 | MC |
| SRR8582893 | panicle | PM | 0.33 | MC |
| SRR5110429 | panicle | Dawn | 2.72 | MC |
| SRR5110430 | panicle | Dawn | 1.30 | MC |
| SRR5110431 | panicle | Dawn | 1.25 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.37 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 2.15 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.24 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 2.00 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.60 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.68 | MC |
| SRR5110439 | panicle | Dawn + 7h | 2.00 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 0.98 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.86 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.14 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.12 | MC |
| SRR5110445 | panicle | Dusk | 0.91 | MC |
| SRR5110446 | panicle | Dusk | 2.11 | MC |
| SRR5110447 | panicle | Dusk | 2.94 | MC |
| SRR5110448 | panicle | Dusk | 5.23 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.74 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.37 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.44 | MC |
| SRR5110452 | panicle | Dawn + 14h | 3.26 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.50 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 2.97 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 4.08 | MC |
| SRR5110457 | panicle | Dawn + 21h | 2.67 | MC |
| SRR5110458 | panicle | Dawn + 21h | 3.18 | MC |
| SRR5110460 | panicle | Dawn + 21h | 3.22 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.56 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.43 | MC |
| SRR5126147 | root | "mock,1_day" | 3.66 | MC |
| SRR5126149 | root | "mock,1_day" | 3.11 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 3.20 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 2.99 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.94 | MC |
| SRR5126157 | root | "mock,7_days" | 3.58 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.63 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.63 | MC |
| SRR5126167 | root | "mock,14_days" | 2.92 | MC |
| SRR5126169 | root | "mock,14_days" | 2.01 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 3.54 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.41 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.75 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.43 | MC |
| SRR4947480 | root | control | 0.97 | MC |
| SRR4947481 | root | control | 2.30 | MC |
| SRR4947484 | root | Al | 0.78 | MC |
| SRR4947485 | root | Al | 1.07 | MC |
| SRR4947488 | root | control | 0.61 | MC |
| SRR4947491 | root | Al | 0.79 | MC |
| SRR4947501 | root | Al | 1.39 | MC |
| SRR4947502 | root | control | 0.67 | MC |
| SRR4947504 | root | control | 0.67 | MC |
| SRR4947508 | root | Al | 0.67 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.93 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.34 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.50 | MC |
| SRR6502094 | root | control | 1.69 | MC |
| SRR6502095 | root | control | 0.80 | MC |
| SRR6502096 | root | control | 1.26 | MC |
| SRR6502103 | root | 100 mM NaCl | 2.09 | MC |
| SRR6502104 | root | 100 mM NaCl | 2.21 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.43 | MC |
| SRR6502106 | root | control | 1.18 | MC |
| SRR6502107 | root | control | 1.28 | MC |
| SRR6502108 | root | control | 3.72 | MC |
| SRR1740435 | root_differentiation_zone | wt | 2.05 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.77 | MC |
| SRR1740433 | root_elongation_zone | wt | 2.64 | MC |
| SRR1740428 | root_meristematic_zone | wt | 0.67 | MC |
| SRR1740429 | root_meristematic_zone | wt | 2.10 | MC |
| SRR1740430 | root_meristematic_zone | wt | 2.47 | MC |
| SRR6441554 | seedling | wild_type | 2.25 | MC |
| SRR6441555 | seedling | wild_type | 2.49 | MC |
| SRR2154082 | seedling | wt | 3.10 | MC |
| SRR2154084 | seedling | wt | 2.30 | MC |
| SRR2154085 | seedling | wt | 2.00 | MC |
| SRR358791 | seedling | wt | 2.06 | MC |
| SRR358792 | seedling | wt | 1.91 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.86 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.70 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 13.73 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.14 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.15 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.62 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.25 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.97 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.23 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.30 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.13 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.95 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.31 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.83 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.19 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 3.43 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 4.50 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 4.75 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 3.99 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 3.02 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.10 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 2.46 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 3.28 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 2.14 | MC |