| SRR4457249 | 2nd_leaf | DAH4 | 0.94 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.83 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.30 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.41 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.31 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.43 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.54 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.33 | MC |
| SRR5560727 | caryopsis | wild_type | 0.31 | MC |
| SRR5560728 | caryopsis | wild_type | 0.37 | MC |
| SRR5560729 | caryopsis | wild_type | 0.60 | MC |
| SRR7265402 | coleoptile | 2dA | 0.33 | MC |
| SRR7265405 | coleoptile | 2dN | 0.42 | MC |
| SRR7265406 | coleoptile | 3dA | 0.35 | MC |
| SRR7265407 | coleoptile | 3dA | 0.27 | MC |
| SRR7265409 | coleoptile | 3dN | 0.56 | MC |
| SRR7265411 | coleoptile | 3dN | 0.55 | MC |
| SRR7265412 | coleoptile | 4dA | 0.92 | MC |
| SRR7265413 | coleoptile | 4dA | 0.86 | MC |
| SRR7265414 | coleoptile | 4dA | 0.82 | MC |
| SRR7265417 | coleoptile | 4dN | 0.44 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.12 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.82 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.55 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.07 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.50 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.19 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.69 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.04 | MC |
| SRR7265399 | embryo | 24hN | 0.40 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.65 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.36 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.32 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.32 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.49 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.41 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.31 | MC |
| SRR8060835 | leaf | wild_type | 1.53 | MC |
| SRR8060836 | leaf | wild_type | 0.33 | MC |
| SRR8060837 | leaf | wild_type | 1.02 | MC |
| SRR8240824 | leaf | wild_type | 0.32 | MC |
| SRR8240825 | leaf | wild_type | 0.25 | MC |
| SRR8240826 | leaf | wild_type | 0.32 | MC |
| SRR8240818 | leaf | wild_type | 0.29 | MC |
| SRR8240819 | leaf | wild_type | 0.56 | MC |
| SRR8240820 | leaf | wild_type | 0.24 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.46 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.71 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.66 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.02 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.36 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.44 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.46 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.24 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.32 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.36 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.64 | MC |
| SRR504365 | leaf | wt | 0.84 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.51 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.39 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.29 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.57 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.45 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.63 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.61 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.52 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.70 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.91 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 3.35 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.24 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.45 | MC |
| SRR1213692 | leaf | wt | 0.46 | MC |
| SRR1213693 | leaf | wt | 0.76 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.50 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.45 | MC |
| SRR6502090 | leaf | control | 0.32 | MC |
| SRR6502101 | leaf | control | 0.51 | MC |
| SRR5856927 | leaf | control | 2.17 | MC |
| SRR5856928 | leaf | control | 2.12 | MC |
| SRR5856930 | leaf | salt | 1.58 | MC |
| SRR5856931 | leaf | salt | 0.74 | MC |
| SRR5856932 | leaf | salt | 0.98 | MC |
| SRR5856933 | leaf | control | 2.01 | MC |
| SRR5856934 | leaf | control | 1.07 | MC |
| SRR5856935 | leaf | control | 1.29 | MC |
| SRR5856936 | leaf | salt | 0.76 | MC |
| SRR5856937 | leaf | salt | 0.83 | MC |
| SRR5856938 | leaf | salt | 0.57 | MC |
| SRR6168973 | leaf | none (control) | 0.28 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.65 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.81 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.68 | MC |
| SRR6168979 | leaf | none (control) | 0.47 | MC |
| SRR6168981 | leaf | none (control) | 0.51 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.68 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.86 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.76 | MC |
| SRR8582889 | panicle | AM | 0.15 | MC |
| SRR8582890 | panicle | AM | 0.20 | MC |
| SRR8582891 | panicle | PM | 0.77 | MC |
| SRR8582893 | panicle | PM | 0.80 | MC |
| SRR4947496 | root | control | 2.07 | MC |
| SRR1633182 | panicle | WT | 0.28 | MC |
| SRR1633185 | panicle | WT | 0.44 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.49 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.33 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.34 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.82 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.24 | MC |
| SRR5126147 | root | "mock,1_day" | 0.36 | MC |
| SRR5126149 | root | "mock,1_day" | 0.64 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.83 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.75 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.51 | MC |
| SRR5126153 | root | "mock,7_days" | 0.53 | MC |
| SRR5126155 | root | "mock,7_days" | 1.23 | MC |
| SRR5126157 | root | "mock,7_days" | 0.83 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.64 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.56 | MC |
| SRR5126167 | root | "mock,14_days" | 0.38 | MC |
| SRR5126169 | root | "mock,14_days" | 0.76 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.64 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.90 | MC |
| SRR1213694 | root | wt | 0.91 | MC |
| SRR1213695 | root | wt | 0.56 | MC |
| SRR4947480 | root | control | 2.03 | MC |
| SRR4947481 | root | control | 1.08 | MC |
| SRR4947484 | root | Al | 1.30 | MC |
| SRR4947485 | root | Al | 1.59 | MC |
| SRR4947488 | root | control | 2.19 | MC |
| SRR4947489 | root | control | 1.47 | MC |
| SRR4947492 | root | Al | 1.23 | MC |
| SRR4947493 | root | Al | 0.67 | MC |
| SRR4947497 | root | control | 0.93 | MC |
| SRR4947500 | root | Al | 1.04 | MC |
| SRR4947501 | root | Al | 0.64 | MC |
| SRR4947504 | root | control | 1.05 | MC |
| SRR4947505 | root | control | 1.14 | MC |
| SRR4947508 | root | Al | 1.42 | MC |
| SRR4947509 | root | Al | 0.76 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.36 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.95 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.14 | MC |
| SRR6502094 | root | control | 1.11 | MC |
| SRR6502095 | root | control | 1.59 | MC |
| SRR6502096 | root | control | 1.18 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.73 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.75 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.38 | MC |
| SRR6502106 | root | control | 1.63 | MC |
| SRR6502107 | root | control | 1.01 | MC |
| SRR6502108 | root | control | 0.60 | MC |
| SRR6441554 | seedling | wild_type | 0.48 | MC |
| SRR6441555 | seedling | wild_type | 0.76 | MC |
| SRR2154086 | seedling | wt | 0.58 | MC |
| SRR2154084 | seedling | wt | 0.65 | MC |
| SRR2154085 | seedling | wt | 0.41 | MC |
| SRR3098741 | seedling | wt | 0.28 | MC |
| SRR3098743 | seedling | wt | 0.26 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.59 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 1.64 | MC |
| SRR358791 | seedling | wt | 0.71 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.81 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.65 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.88 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.16 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.18 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.55 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.24 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.37 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.65 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.12 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.82 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.15 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.81 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.82 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.50 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.93 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.34 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.32 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.58 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.29 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.47 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 0.85 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 0.66 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 0.57 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.58 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.18 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.75 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.81 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.59 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.36 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.43 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 4.52 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 3.70 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 4.14 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.20 | MC |