| SRR4457249 | 2nd_leaf | DAH4 | 0.63 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.89 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.39 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.33 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.47 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.45 | MC |
| SRR358796 | callus | wt | 1.01 | MC |
| SRR5560727 | caryopsis | wild_type | 0.29 | MC |
| SRR5560729 | caryopsis | wild_type | 0.52 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.98 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.96 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.95 | MC |
| SRR2338867 | endosprem | control | 1.12 | MC |
| SRR2338868 | endosprem | high_temperature | 0.91 | MC |
| SRR2338869 | endosprem | high_temperature | 1.97 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.57 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.55 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.69 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.46 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.37 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.52 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.30 | MC |
| SRR1213691 | flower | wt | 0.47 | MC |
| SRR8240824 | leaf | wild_type | 0.43 | MC |
| SRR8240825 | leaf | wild_type | 0.30 | MC |
| SRR8240826 | leaf | wild_type | 0.58 | MC |
| SRR8240819 | leaf | wild_type | 0.73 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.36 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.60 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.76 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.36 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.27 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.44 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.44 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.45 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.30 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.90 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.74 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.60 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.81 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.59 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.47 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.48 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.72 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.48 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.72 | MC |
| SRR1761528 | leaf | drought | 1.48 | MC |
| SRR1761530 | leaf | control | 0.72 | MC |
| SRR504365 | leaf | wt | 1.18 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.40 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.85 | MC |
| SRR6417967 | leaf | H2O_control | 1.24 | MC |
| SRR6417968 | leaf | H2O_control | 0.81 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.43 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.27 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.74 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.36 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.46 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.22 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.52 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.27 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.84 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.66 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.10 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.51 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.79 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.30 | MC |
| SRR1213692 | leaf | wt | 0.96 | MC |
| SRR1213693 | leaf | wt | 0.85 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.37 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.53 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.40 | MC |
| SRR8582888 | panicle | AM | 0.67 | MC |
| SRR8582889 | panicle | AM | 0.56 | MC |
| SRR8582890 | panicle | AM | 0.30 | MC |
| SRR8582891 | panicle | PM | 0.81 | MC |
| SRR8582892 | panicle | PM | 1.26 | MC |
| SRR8582893 | panicle | PM | 0.77 | MC |
| SRR5110429 | panicle | Dawn | 2.97 | MC |
| SRR5110430 | panicle | Dawn | 4.20 | MC |
| SRR5110431 | panicle | Dawn | 2.73 | MC |
| SRR5110432 | panicle | Dawn | 1.24 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 2.35 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.28 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 2.74 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 1.08 | MC |
| SRR5110437 | panicle | Dawn + 7h | 2.04 | MC |
| SRR5110438 | panicle | Dawn + 7h | 2.00 | MC |
| SRR5110439 | panicle | Dawn + 7h | 2.48 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.19 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.75 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.82 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.88 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.10 | MC |
| SRR5110445 | panicle | Dusk | 1.36 | MC |
| SRR5110446 | panicle | Dusk | 0.79 | MC |
| SRR5110447 | panicle | Dusk | 1.04 | MC |
| SRR5110448 | panicle | Dusk | 0.81 | MC |
| SRR5110449 | panicle | Dawn + 14h | 2.52 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.15 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.89 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.29 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.82 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.10 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 2.05 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.23 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.87 | MC |
| SRR5110458 | panicle | Dawn + 21h | 2.17 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.29 | MC |
| SRR5110460 | panicle | Dawn + 21h | 2.47 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.15 | MC |
| SRR1633182 | panicle | WT | 0.58 | MC |
| SRR1633185 | panicle | WT | 2.06 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.69 | MC |
| SRR1213695 | root | wt | 1.29 | MC |
| SRR4947483 | root | Al | 0.54 | MC |
| SRR4947491 | root | Al | 0.64 | MC |
| SRR4947503 | root | control | 0.77 | MC |
| SRR6441555 | seedling | wild_type | 0.54 | MC |
| SRR3098741 | seedling | wt | 0.26 | MC |
| SRR3098742 | seedling | wt | 0.16 | MC |
| SRR3098743 | seedling | wt | 0.18 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.27 | MC |
| SRR358791 | seedling | wt | 0.73 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.11 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.02 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.09 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.44 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.34 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.77 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.24 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.48 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.32 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.41 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.53 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.48 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.63 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.16 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.39 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.29 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.58 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.86 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.31 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.46 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.04 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.51 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.42 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.17 | MC |