| SRR4457249 | 2nd_leaf | DAH4 | 1.92 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 1.80 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 2.05 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 2.60 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 2.83 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 5.72 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.27 | MC |
| SRR3745125 | anther | wt | 2.11 | MC |
| SRR3745126 | anther | wt | 4.76 | MC |
| SRR3745127 | anther | wt | 2.71 | MC |
| SRR6320473 | carpel | wt | 2.42 | MC |
| SRR5560727 | caryopsis | wild_type | 1.39 | MC |
| SRR5560728 | caryopsis | wild_type | 2.53 | MC |
| SRR5560729 | caryopsis | wild_type | 2.02 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 3.79 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.53 | MC |
| SRR4947495 | root | control | 4.82 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 4.12 | MC |
| SRR7265400 | coleoptile | 2dA | 1.94 | MC |
| SRR7265401 | coleoptile | 2dA | 2.50 | MC |
| SRR7265402 | coleoptile | 2dA | 1.52 | MC |
| SRR7265404 | coleoptile | 2dN | 0.79 | MC |
| SRR7265405 | coleoptile | 2dN | 0.58 | MC |
| SRR7265406 | coleoptile | 3dA | 1.98 | MC |
| SRR7265408 | coleoptile | 3dA | 0.71 | MC |
| SRR7265409 | coleoptile | 3dN | 1.80 | MC |
| SRR7265410 | coleoptile | 3dN | 2.31 | MC |
| SRR7265411 | coleoptile | 3dN | 1.61 | MC |
| SRR7265412 | coleoptile | 4dA | 2.40 | MC |
| SRR7265414 | coleoptile | 4dA | 1.05 | MC |
| SRR7265415 | coleoptile | 4dN | 4.66 | MC |
| SRR7265416 | coleoptile | 4dN | 1.37 | MC |
| SRR7265417 | coleoptile | 4dN | 0.78 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.56 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 2.38 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.36 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.30 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.11 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.30 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 3.36 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 2.19 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.63 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 2.08 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 2.45 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.36 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.68 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 2.30 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.26 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.68 | MC |
| SRR7265376 | embryo | 1hA | 2.34 | MC |
| SRR7265377 | embryo | 1hA | 2.86 | MC |
| SRR7265378 | embryo | 1hA | 2.76 | MC |
| SRR7265380 | embryo | 1hN | 2.36 | MC |
| SRR7265381 | embryo | 1hN | 3.06 | MC |
| SRR7265382 | embryo | 3hA | 4.39 | MC |
| SRR7265383 | embryo | 3hA | 3.71 | MC |
| SRR7265386 | embryo | 3hN | 1.85 | MC |
| SRR7265387 | embryo | 3hN | 2.87 | MC |
| SRR7265388 | embryo | 12hA | 0.99 | MC |
| SRR7265389 | embryo | 12hA | 2.25 | MC |
| SRR7265390 | embryo | 12hA | 1.78 | MC |
| SRR7265391 | embryo | 12hN | 0.52 | MC |
| SRR7265392 | embryo | 12hN | 0.83 | MC |
| SRR7265393 | embryo | 12hN | 0.58 | MC |
| SRR7265395 | embryo | 24hA | 4.69 | MC |
| SRR7265396 | embryo | 24hA | 1.15 | MC |
| SRR7265397 | embryo | 24hN | 1.51 | MC |
| SRR7265398 | embryo | 24hN | 1.10 | MC |
| SRR2338866 | endosprem | control | 3.48 | MC |
| SRR2338867 | endosprem | control | 0.77 | MC |
| SRR2338868 | endosprem | high_temperature | 0.66 | MC |
| SRR2338869 | endosprem | high_temperature | 1.12 | MC |
| SRR976168 | flag_leaf | wild_type | 1.14 | MC |
| SRR4457231 | flag_leaf | DAH4 | 2.25 | MC |
| SRR4457232 | flag_leaf | DAH4 | 2.88 | MC |
| SRR4457233 | flag_leaf | DAH4 | 2.04 | MC |
| SRR4457236 | flag_leaf | DAH12 | 3.47 | MC |
| SRR4457243 | flag_leaf | DAH36 | 2.85 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.30 | MC |
| SRR1213691 | flower | wt | 2.19 | MC |
| SRR8060835 | leaf | wild_type | 1.50 | MC |
| SRR8060836 | leaf | wild_type | 1.05 | MC |
| SRR8060837 | leaf | wild_type | 0.46 | MC |
| SRR8240826 | leaf | wild_type | 2.33 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 3.38 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.62 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.77 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.67 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.82 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 6.94 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.33 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.35 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.66 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.63 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.39 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.54 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.08 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.40 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.86 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 3.68 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 4.34 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 2.90 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.58 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.89 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.19 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 5.28 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.81 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 6.40 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.38 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.66 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.59 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.19 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.40 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.84 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.64 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.01 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 2.84 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.58 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 3.42 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 2.64 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 2.25 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 2.45 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 2.64 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 2.25 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 2.45 | MC |
| SRR1761528 | leaf | drought | 2.64 | MC |
| SRR1761529 | leaf | drought | 2.25 | MC |
| SRR1761530 | leaf | control | 2.45 | MC |
| SRR504365 | leaf | wt | 3.16 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.54 | MC |
| SRR6417967 | leaf | H2O_control | 3.03 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 2.54 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 4.24 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.67 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.84 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.30 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.71 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.01 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 2.28 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.93 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.38 | MC |
| SRR1213692 | leaf | wt | 1.68 | MC |
| SRR1213693 | leaf | wt | 2.52 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 2.71 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 2.67 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.63 | MC |
| SRR6502088 | leaf | control | 3.02 | MC |
| SRR6502089 | leaf | control | 0.76 | MC |
| SRR6502090 | leaf | control | 0.91 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 4.37 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 2.18 | MC |
| SRR6502100 | leaf | control | 3.86 | MC |
| SRR6502102 | leaf | control | 1.88 | MC |
| SRR5856927 | leaf | control | 1.30 | MC |
| SRR5856928 | leaf | control | 1.07 | MC |
| SRR5856929 | leaf | control | 0.84 | MC |
| SRR5856930 | leaf | salt | 1.31 | MC |
| SRR5856931 | leaf | salt | 0.40 | MC |
| SRR5856932 | leaf | salt | 1.38 | MC |
| SRR5856933 | leaf | control | 1.71 | MC |
| SRR5856935 | leaf | control | 2.45 | MC |
| SRR5856936 | leaf | salt | 0.63 | MC |
| SRR5856938 | leaf | salt | 0.93 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 2.12 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 2.61 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 1.53 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 3.84 | MC |
| SRR6168973 | leaf | none (control) | 2.41 | MC |
| SRR6168975 | leaf | none (control) | 3.36 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 2.75 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 2.48 | MC |
| SRR8582889 | panicle | AM | 0.21 | MC |
| SRR8582890 | panicle | AM | 0.38 | MC |
| SRR8582891 | panicle | PM | 0.48 | MC |
| SRR8582892 | panicle | PM | 1.70 | MC |
| SRR8582893 | panicle | PM | 0.98 | MC |
| SRR5110430 | panicle | Dawn | 4.53 | MC |
| SRR5110432 | panicle | Dawn | 3.40 | MC |
| SRR4947496 | root | control | 4.77 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.61 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 2.88 | MC |
| SRR5110439 | panicle | Dawn + 7h | 3.45 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.80 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 2.21 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 3.01 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.72 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.59 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 2.03 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 2.36 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.81 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 3.39 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 3.13 | MC |
| SRR5126147 | root | "mock,1_day" | 2.00 | MC |
| SRR5126148 | root | "mock,1_day" | 2.29 | MC |
| SRR5126149 | root | "mock,1_day" | 3.89 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.46 | MC |
| SRR5126155 | root | "mock,7_days" | 3.74 | MC |
| SRR5126157 | root | "mock,7_days" | 4.88 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 3.22 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.98 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 4.53 | MC |
| SRR5126165 | root | "mock,14_days" | 4.09 | MC |
| SRR5126169 | root | "mock,14_days" | 3.07 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 3.67 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 3.46 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 5.15 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.10 | MC |
| SRR1213694 | root | wt | 0.65 | MC |
| SRR4947480 | root | control | 4.00 | MC |
| SRR4947481 | root | control | 2.92 | MC |
| SRR4947484 | root | Al | 3.14 | MC |
| SRR4947485 | root | Al | 2.92 | MC |
| SRR4947491 | root | Al | 5.38 | MC |
| SRR4947492 | root | Al | 2.69 | MC |
| SRR4947493 | root | Al | 2.78 | MC |
| SRR4947497 | root | control | 3.83 | MC |
| SRR4947504 | root | control | 2.77 | MC |
| SRR6502091 | root | 100 mM NaCl | 3.18 | MC |
| SRR6502092 | root | 100 mM NaCl | 2.42 | MC |
| SRR6502093 | root | 100 mM NaCl | 5.67 | MC |
| SRR6502095 | root | control | 2.62 | MC |
| SRR6502103 | root | 100 mM NaCl | 3.53 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.90 | MC |
| SRR6502106 | root | control | 2.70 | MC |
| SRR6502107 | root | control | 2.40 | MC |
| SRR1740434 | root_differentiation_zone | wt | 2.82 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.02 | MC |
| SRR1740436 | root_differentiation_zone | wt | 2.41 | MC |
| SRR1740431 | root_elongation_zone | wt | 3.11 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.11 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.96 | MC |
| SRR1740428 | root_meristematic_zone | wt | 2.51 | MC |
| SRR1740429 | root_meristematic_zone | wt | 2.10 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.47 | MC |
| SRR6441554 | seedling | wild_type | 2.39 | MC |
| SRR6441555 | seedling | wild_type | 1.24 | MC |
| SRR2154086 | seedling | wt | 3.54 | MC |
| SRR2154087 | seedling | wt | 2.50 | MC |
| SRR3098741 | seedling | wt | 1.98 | MC |
| SRR3098742 | seedling | wt | 2.49 | MC |
| SRR3098743 | seedling | wt | 1.36 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.75 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.51 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.34 | MC |
| SRR1944583 | seedling | no_treatment | 3.34 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.95 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.20 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.12 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.19 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.09 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.33 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.30 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.28 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.31 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 2.24 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 4.10 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 7.77 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 4.19 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 5.57 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 7.69 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 5.49 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 2.41 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 3.18 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 5.67 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 7.74 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.84 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 3.17 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.22 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 2.31 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.72 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.89 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.76 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 2.23 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.91 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.93 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 2.83 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.87 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 3.07 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 2.15 | MC |