| SRR4457249 | 2nd_leaf | DAH4 | 3.78 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 3.25 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 3.03 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 3.25 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 4.50 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 4.10 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 2.13 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 3.42 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 3.54 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 3.13 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.73 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 5.04 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 5.66 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 3.40 | MC |
| SRR358795 | callus | wt | 4.84 | MC |
| SRR358796 | callus | wt | 4.48 | MC |
| SRR358797 | callus | wt | 6.47 | MC |
| SRR358798 | callus | wt | 4.28 | MC |
| SRR5560727 | caryopsis | wild_type | 3.82 | MC |
| SRR5560728 | caryopsis | wild_type | 1.79 | MC |
| SRR5560729 | caryopsis | wild_type | 2.51 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.79 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.14 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 3.38 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 2.49 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 2.11 | MC |
| SRR976168 | flag_leaf | wild_type | 0.50 | MC |
| SRR4457231 | flag_leaf | DAH4 | 1.96 | MC |
| SRR4457232 | flag_leaf | DAH4 | 2.40 | MC |
| SRR4457233 | flag_leaf | DAH4 | 2.19 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.38 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.45 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.29 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.61 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.63 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.93 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.98 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.12 | MC |
| SRR4457242 | flag_leaf | DAH28 | 1.43 | MC |
| SRR4457243 | flag_leaf | DAH36 | 2.38 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.64 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.48 | MC |
| SRR4457246 | flag_leaf | DAH44 | 3.98 | MC |
| SRR4457247 | flag_leaf | DAH44 | 2.07 | MC |
| SRR4457248 | flag_leaf | DAH44 | 3.62 | MC |
| SRR1213691 | flower | wt | 3.02 | MC |
| SRR8240825 | leaf | wild_type | 2.37 | MC |
| SRR8240818 | leaf | wild_type | 1.46 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 3.73 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.66 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.00 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.50 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.55 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.37 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.40 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.26 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.23 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.60 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.60 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.26 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.40 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 4.07 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 1.63 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 3.18 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.03 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.28 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.63 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.31 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.98 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.61 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.86 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.23 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.10 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.61 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.22 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.49 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.69 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.93 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.56 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.42 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.65 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.15 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 1.08 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.66 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.64 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 2.36 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.67 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.01 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.25 | MC |
| SRR8611900 | leaf | Non-inoculated | 3.69 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.42 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.35 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.20 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 3.55 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 2.46 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 3.63 | MC |
| SRR5856927 | leaf | control | 1.93 | MC |
| SRR5856930 | leaf | salt | 0.79 | MC |
| SRR5856931 | leaf | salt | 1.36 | MC |
| SRR5856932 | leaf | salt | 0.97 | MC |
| SRR5856937 | leaf | salt | 1.62 | MC |
| SRR5856938 | leaf | salt | 1.50 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 5.01 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 5.14 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 5.19 | MC |
| SRR6168974 | leaf | none (control) | 2.75 | MC |
| SRR6168975 | leaf | none (control) | 2.02 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.72 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 2.34 | MC |
| SRR6168981 | leaf | none (control) | 0.25 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.25 | MC |
| SRR4947496 | root | control | 0.85 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.85 | MC |
| SRR5126147 | root | "mock,1_day" | 2.91 | MC |
| SRR5126148 | root | "mock,1_day" | 2.69 | MC |
| SRR5126149 | root | "mock,1_day" | 1.65 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.32 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.87 | MC |
| SRR5126153 | root | "mock,7_days" | 1.91 | MC |
| SRR5126155 | root | "mock,7_days" | 1.31 | MC |
| SRR5126157 | root | "mock,7_days" | 1.88 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.60 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.95 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.41 | MC |
| SRR5126165 | root | "mock,14_days" | 1.28 | MC |
| SRR5126167 | root | "mock,14_days" | 1.03 | MC |
| SRR5126169 | root | "mock,14_days" | 1.83 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.68 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.44 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.16 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.04 | MC |
| SRR1213694 | root | wt | 0.39 | MC |
| SRR4947484 | root | Al | 1.87 | MC |
| SRR4947488 | root | control | 1.93 | MC |
| SRR4947492 | root | Al | 1.03 | MC |
| SRR4947493 | root | Al | 1.34 | MC |
| SRR4947500 | root | Al | 1.68 | MC |
| SRR4947501 | root | Al | 1.36 | MC |
| SRR4947504 | root | control | 0.94 | MC |
| SRR4947505 | root | control | 0.93 | MC |
| SRR4947508 | root | Al | 0.57 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.84 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.63 | MC |
| SRR6502094 | root | control | 0.61 | MC |
| SRR6502095 | root | control | 0.39 | MC |
| SRR6502096 | root | control | 0.88 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.80 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.66 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.86 | MC |
| SRR6502106 | root | control | 0.56 | MC |
| SRR6502107 | root | control | 1.44 | MC |
| SRR6502108 | root | control | 1.56 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.01 | MC |
| SRR1740435 | root_differentiation_zone | wt | 2.02 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.68 | MC |
| SRR1740431 | root_elongation_zone | wt | 2.38 | MC |
| SRR1740428 | root_meristematic_zone | wt | 3.47 | MC |
| SRR2154085 | seedling | wt | 3.85 | MC |
| SRR2154087 | seedling | wt | 1.73 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.66 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 3.78 | MC |
| SRR358792 | seedling | wt | 6.41 | MC |
| SRR358793 | seedling | wt | 4.63 | MC |
| SRR358794 | seedling | wt | 6.40 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.14 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.37 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.15 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.57 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.75 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.25 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.32 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.92 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.99 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.70 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.58 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.87 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 2.80 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 2.08 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 1.50 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 3.08 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.31 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.57 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.73 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.79 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.90 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.64 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 2.99 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 4.66 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 4.02 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 3.29 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 3.61 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 4.53 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 3.08 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.45 | MC |