| SRR4457249 | 2nd_leaf | DAH4 | 3.29 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 1.76 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 2.51 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.96 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.75 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.70 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.46 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.04 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.82 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.59 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 1.08 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 2.68 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.55 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.06 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.63 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.69 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.48 | MC |
| SRR358795 | callus | wt | 1.05 | MC |
| SRR358796 | callus | wt | 1.23 | MC |
| SRR6320473 | carpel | wt | 5.43 | MC |
| SRR6320498 | carpel | wt | 5.13 | MC |
| SRR5560728 | caryopsis | wild_type | 3.73 | MC |
| SRR5560729 | caryopsis | wild_type | 3.63 | MC |
| SRR7265400 | coleoptile | 2dA | 0.37 | MC |
| SRR7265403 | coleoptile | 2dN | 0.50 | MC |
| SRR7265404 | coleoptile | 2dN | 0.57 | MC |
| SRR7265405 | coleoptile | 2dN | 0.63 | MC |
| SRR7265406 | coleoptile | 3dA | 0.85 | MC |
| SRR7265407 | coleoptile | 3dA | 0.80 | MC |
| SRR7265408 | coleoptile | 3dA | 0.72 | MC |
| SRR7265409 | coleoptile | 3dN | 1.35 | MC |
| SRR7265410 | coleoptile | 3dN | 2.12 | MC |
| SRR7265411 | coleoptile | 3dN | 1.89 | MC |
| SRR7265415 | coleoptile | 4dN | 2.56 | MC |
| SRR7265416 | coleoptile | 4dN | 3.62 | MC |
| SRR7265417 | coleoptile | 4dN | 3.55 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.34 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.39 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.62 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.02 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.05 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.77 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.81 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.42 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.44 | MC |
| SRR7265391 | embryo | 12hN | 0.56 | MC |
| SRR7265393 | embryo | 12hN | 0.45 | MC |
| SRR7265394 | embryo | 24hA | 0.68 | MC |
| SRR7265398 | embryo | 24hN | 0.44 | MC |
| SRR7265399 | embryo | 24hN | 0.50 | MC |
| SRR976168 | flag_leaf | wild_type | 0.79 | MC |
| SRR4457231 | flag_leaf | DAH4 | 1.77 | MC |
| SRR4457232 | flag_leaf | DAH4 | 2.75 | MC |
| SRR4457233 | flag_leaf | DAH4 | 2.34 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.32 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.45 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.63 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.63 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.51 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.75 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.64 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.48 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.96 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.63 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.82 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.51 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.03 | MC |
| SRR4457248 | flag_leaf | DAH44 | 0.90 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.62 | MC |
| SRR1213691 | flower | wt | 3.51 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.30 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.52 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.61 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.99 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.79 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.96 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.99 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.36 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.85 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.36 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.64 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.47 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.34 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.95 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 1.92 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 1.19 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.63 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.70 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.91 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.13 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.97 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.75 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.33 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.29 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.69 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.95 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.36 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.86 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.92 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.06 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.15 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 3.83 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 3.70 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 3.47 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.34 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.05 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.54 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.91 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.34 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.05 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.54 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.91 | MC |
| SRR1761528 | leaf | drought | 1.34 | MC |
| SRR1761529 | leaf | drought | 1.05 | MC |
| SRR1761530 | leaf | control | 0.54 | MC |
| SRR1761531 | leaf | control | 0.91 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.72 | MC |
| SRR6417967 | leaf | H2O_control | 1.20 | MC |
| SRR6417968 | leaf | H2O_control | 1.32 | MC |
| SRR6417969 | leaf | H2O_control | 1.55 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.43 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.77 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.45 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.40 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.49 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.41 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.67 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.55 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.93 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 4.50 | MC |
| SRR6502101 | leaf | control | 2.58 | MC |
| SRR5856927 | leaf | control | 1.63 | MC |
| SRR5856928 | leaf | control | 1.87 | MC |
| SRR5856934 | leaf | control | 2.22 | MC |
| SRR6168980 | leaf | none (control) | 0.63 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.32 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 2.42 | MC |
| SRR5110432 | panicle | Dawn | 3.03 | MC |
| SRR4947496 | root | control | 0.64 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 2.36 | MC |
| SRR5110438 | panicle | Dawn + 7h | 2.83 | MC |
| SRR5110440 | panicle | Dawn + 7h | 4.45 | MC |
| SRR5110459 | panicle | Dawn + 21h | 2.84 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.19 | MC |
| SRR1633182 | panicle | WT | 0.28 | MC |
| SRR1633185 | panicle | WT | 0.91 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.26 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.62 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.36 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.44 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 2.25 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 2.36 | MC |
| SRR5126169 | root | "mock,14_days" | 0.37 | MC |
| SRR4947480 | root | control | 0.75 | MC |
| SRR4947481 | root | control | 0.85 | MC |
| SRR4947485 | root | Al | 1.12 | MC |
| SRR4947488 | root | control | 0.52 | MC |
| SRR4947489 | root | control | 0.84 | MC |
| SRR4947504 | root | control | 0.55 | MC |
| SRR4947506 | root | Al | 0.45 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.24 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.16 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.65 | MC |
| SRR358791 | seedling | wt | 6.23 | MC |
| SRR358792 | seedling | wt | 7.30 | MC |
| SRR358793 | seedling | wt | 3.77 | MC |
| SRR358794 | seedling | wt | 4.39 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.92 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 11.90 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.54 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.51 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.30 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.45 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.81 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.44 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.33 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 2.08 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 2.94 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 3.19 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 4.50 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.27 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 0.57 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.46 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.45 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 2.78 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.94 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.06 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.54 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.53 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.46 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.26 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.61 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.43 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.77 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.80 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.90 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.24 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.78 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.81 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.73 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.70 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.45 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 2.13 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 2.03 | MC |