| SRR4457252 | 2nd_leaf | DAH12 | 0.52 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.36 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 3.49 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 1.66 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 5.25 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.21 | MC |
| SRR5560728 | caryopsis | wild_type | 5.06 | MC |
| SRR5560729 | caryopsis | wild_type | 1.67 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.56 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.80 | MC |
| SRR7265407 | coleoptile | 3dA | 2.42 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.06 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.04 | MC |
| SRR2338868 | endosprem | high_temperature | 0.68 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.39 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.39 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.94 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.32 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.86 | MC |
| SRR4457238 | flag_leaf | DAH20 | 1.08 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.64 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.10 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.94 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.30 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.37 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.57 | MC |
| SRR8060835 | leaf | wild_type | 2.19 | MC |
| SRR8060837 | leaf | wild_type | 2.34 | MC |
| SRR8240826 | leaf | wild_type | 0.98 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 2.60 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.65 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.96 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.91 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.62 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.46 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.16 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.71 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.55 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.61 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.97 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.47 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.69 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.75 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.59 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.82 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.15 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 5.00 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.49 | MC |
| SRR6417969 | leaf | H2O_control | 0.42 | MC |
| SRR8611900 | leaf | Non-inoculated | 2.22 | MC |
| SRR8611902 | leaf | Non-inoculated | 2.72 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 2.80 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.01 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.43 | MC |
| SRR1213692 | leaf | wt | 1.97 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 1.71 | MC |
| SRR6168973 | leaf | none (control) | 1.48 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 3.28 | MC |
| SRR6168979 | leaf | none (control) | 0.85 | MC |
| SRR8582889 | panicle | AM | 1.66 | MC |
| SRR5110437 | panicle | Dawn + 7h | 2.74 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.57 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 2.48 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 2.29 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 2.74 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 2.44 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 2.33 | MC |
| SRR5126147 | root | "mock,1_day" | 1.93 | MC |
| SRR5126148 | root | "mock,1_day" | 3.19 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 4.50 | MC |
| SRR5126153 | root | "mock,7_days" | 1.89 | MC |
| SRR5126155 | root | "mock,7_days" | 1.74 | MC |
| SRR5126157 | root | "mock,7_days" | 1.58 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.94 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 3.18 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 3.12 | MC |
| SRR5126165 | root | "mock,14_days" | 2.60 | MC |
| SRR5126167 | root | "mock,14_days" | 3.24 | MC |
| SRR5126169 | root | "mock,14_days" | 1.42 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.53 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.28 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.31 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.10 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 2.39 | MC |
| SRR1213695 | root | wt | 1.31 | MC |
| SRR4947498 | root | Al | 5.05 | MC |
| SRR6441554 | seedling | wild_type | 1.64 | MC |
| SRR6441555 | seedling | wild_type | 0.76 | MC |
| SRR2154084 | seedling | wt | 1.27 | MC |
| SRR2154085 | seedling | wt | 1.85 | MC |
| SRR3098742 | seedling | wt | 1.16 | MC |
| SRR3098743 | seedling | wt | 1.57 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.82 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.74 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.71 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.79 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.88 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.52 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.18 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.14 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.98 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.61 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.98 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.51 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.23 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.63 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.61 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.83 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.53 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.75 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.44 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.02 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.86 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.49 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.81 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.75 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.67 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 2.08 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.85 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 2.34 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.99 | MC |