| SRR4457249 | 2nd_leaf | DAH4 | 1.08 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 1.72 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.28 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.46 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.66 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 3.36 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 0.99 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 2.47 | MC |
| SRR6320498 | carpel | wt | 1.36 | MC |
| SRR5560727 | caryopsis | wild_type | 0.82 | MC |
| SRR5560728 | caryopsis | wild_type | 0.49 | MC |
| SRR5560729 | caryopsis | wild_type | 0.28 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.14 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.62 | MC |
| SRR7265400 | coleoptile | 2dA | 0.54 | MC |
| SRR7265401 | coleoptile | 2dA | 0.89 | MC |
| SRR7265402 | coleoptile | 2dA | 0.98 | MC |
| SRR7265403 | coleoptile | 2dN | 0.33 | MC |
| SRR7265405 | coleoptile | 2dN | 0.48 | MC |
| SRR7265406 | coleoptile | 3dA | 2.97 | MC |
| SRR7265407 | coleoptile | 3dA | 1.09 | MC |
| SRR7265408 | coleoptile | 3dA | 2.90 | MC |
| SRR7265410 | coleoptile | 3dN | 0.35 | MC |
| SRR7265411 | coleoptile | 3dN | 0.75 | MC |
| SRR7265412 | coleoptile | 4dA | 1.45 | MC |
| SRR7265413 | coleoptile | 4dA | 0.61 | MC |
| SRR7265414 | coleoptile | 4dA | 1.91 | MC |
| SRR7265417 | coleoptile | 4dN | 0.44 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.43 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.88 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.72 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.38 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 2.01 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.35 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.54 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 2.09 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.96 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.37 | MC |
| SRR7265374 | embryo | dry seed 0 h | 3.73 | MC |
| SRR7265376 | embryo | 1hA | 1.61 | MC |
| SRR7265377 | embryo | 1hA | 0.85 | MC |
| SRR7265378 | embryo | 1hA | 1.46 | MC |
| SRR7265379 | embryo | 1hN | 1.45 | MC |
| SRR7265380 | embryo | 1hN | 2.31 | MC |
| SRR7265381 | embryo | 1hN | 1.17 | MC |
| SRR7265382 | embryo | 3hA | 0.67 | MC |
| SRR7265384 | embryo | 3hA | 1.36 | MC |
| SRR7265386 | embryo | 3hN | 0.53 | MC |
| SRR7265387 | embryo | 3hN | 1.10 | MC |
| SRR7265388 | embryo | 12hA | 2.35 | MC |
| SRR7265389 | embryo | 12hA | 1.45 | MC |
| SRR7265390 | embryo | 12hA | 1.09 | MC |
| SRR7265391 | embryo | 12hN | 1.57 | MC |
| SRR7265393 | embryo | 12hN | 1.57 | MC |
| SRR7265394 | embryo | 24hA | 3.95 | MC |
| SRR7265395 | embryo | 24hA | 1.27 | MC |
| SRR7265396 | embryo | 24hA | 1.01 | MC |
| SRR2338866 | endosprem | control | 1.78 | MC |
| SRR2338867 | endosprem | control | 0.67 | MC |
| SRR2338868 | endosprem | high_temperature | 1.43 | MC |
| SRR2338869 | endosprem | high_temperature | 0.59 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.93 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.64 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.30 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.99 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.42 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.36 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.57 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.56 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.30 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.91 | MC |
| SRR4457247 | flag_leaf | DAH44 | 2.22 | MC |
| SRR4457248 | flag_leaf | DAH44 | 0.78 | MC |
| SRR8060835 | leaf | wild_type | 0.52 | MC |
| SRR8060836 | leaf | wild_type | 0.28 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.89 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.77 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.48 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.03 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.96 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.72 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.52 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.62 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.94 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.16 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.97 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.54 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.56 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.45 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.06 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.97 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.53 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.45 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.32 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.71 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.75 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.04 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.54 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.85 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.98 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 1.25 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.98 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 1.25 | MC |
| SRR1761529 | leaf | drought | 1.98 | MC |
| SRR1761531 | leaf | control | 1.25 | MC |
| SRR504365 | leaf | wt | 0.74 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.57 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.10 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.86 | MC |
| SRR6417969 | leaf | H2O_control | 3.32 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 2.19 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 3.05 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 3.83 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.65 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.72 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.47 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.12 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 3.48 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.38 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.76 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.67 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.85 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.43 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.37 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.88 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.19 | MC |
| SRR1213692 | leaf | wt | 2.73 | MC |
| SRR1213693 | leaf | wt | 1.62 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 3.16 | MC |
| SRR6502089 | leaf | control | 1.63 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 4.22 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 2.39 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 2.08 | MC |
| SRR6502102 | leaf | control | 0.70 | MC |
| SRR5856927 | leaf | control | 0.79 | MC |
| SRR5856928 | leaf | control | 0.27 | MC |
| SRR5856929 | leaf | control | 0.47 | MC |
| SRR5856931 | leaf | salt | 0.36 | MC |
| SRR5856932 | leaf | salt | 0.41 | MC |
| SRR5856934 | leaf | control | 0.19 | MC |
| SRR5856936 | leaf | salt | 0.24 | MC |
| SRR5856937 | leaf | salt | 0.22 | MC |
| SRR5856938 | leaf | salt | 0.35 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 4.77 | MC |
| SRR6168973 | leaf | none (control) | 2.95 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.16 | MC |
| SRR8582888 | panicle | AM | 0.72 | MC |
| SRR8582890 | panicle | AM | 0.36 | MC |
| SRR8582893 | panicle | PM | 0.31 | MC |
| SRR5110430 | panicle | Dawn | 2.93 | MC |
| SRR5110445 | panicle | Dusk | 2.53 | MC |
| SRR5110447 | panicle | Dusk | 3.12 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.16 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.89 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.27 | MC |
| SRR5126149 | root | "mock,1_day" | 1.71 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.50 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.61 | MC |
| SRR5126155 | root | "mock,7_days" | 0.63 | MC |
| SRR5126157 | root | "mock,7_days" | 0.56 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.07 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.67 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.47 | MC |
| SRR5126165 | root | "mock,14_days" | 0.42 | MC |
| SRR5126167 | root | "mock,14_days" | 0.53 | MC |
| SRR5126169 | root | "mock,14_days" | 0.98 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.50 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.02 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.63 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.05 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.60 | MC |
| SRR1213694 | root | wt | 0.58 | MC |
| SRR1213695 | root | wt | 0.67 | MC |
| SRR4947478 | root | control | 3.92 | MC |
| SRR4947480 | root | control | 2.55 | MC |
| SRR4947481 | root | control | 1.10 | MC |
| SRR4947484 | root | Al | 1.84 | MC |
| SRR4947488 | root | control | 1.81 | MC |
| SRR4947489 | root | control | 2.04 | MC |
| SRR4947492 | root | Al | 1.81 | MC |
| SRR4947493 | root | Al | 2.10 | MC |
| SRR4947494 | root | control | 2.34 | MC |
| SRR4947498 | root | Al | 1.50 | MC |
| SRR4947500 | root | Al | 3.70 | MC |
| SRR4947502 | root | control | 0.68 | MC |
| SRR4947503 | root | control | 3.13 | MC |
| SRR4947504 | root | control | 2.24 | MC |
| SRR4947506 | root | Al | 1.30 | MC |
| SRR4947508 | root | Al | 3.52 | MC |
| SRR4947509 | root | Al | 1.19 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.11 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.71 | MC |
| SRR6502096 | root | control | 1.26 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.89 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.05 | MC |
| SRR6502106 | root | control | 0.97 | MC |
| SRR6502107 | root | control | 1.74 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.70 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.39 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.74 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.23 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.62 | MC |
| SRR6441554 | seedling | wild_type | 0.31 | MC |
| SRR6441555 | seedling | wild_type | 0.23 | MC |
| SRR2154082 | seedling | wt | 0.49 | MC |
| SRR2154083 | seedling | wt | 0.46 | MC |
| SRR2154084 | seedling | wt | 2.08 | MC |
| SRR2154085 | seedling | wt | 0.91 | MC |
| SRR2154087 | seedling | wt | 0.48 | MC |
| SRR3098741 | seedling | wt | 0.45 | MC |
| SRR3098743 | seedling | wt | 0.37 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.77 | MC |
| SRR2857721 | seedling | drought_stress_6h | 2.25 | MC |
| SRR1944583 | seedling | no_treatment | 2.09 | MC |
| SRR358791 | seedling | wt | 1.97 | MC |
| SRR358793 | seedling | wt | 1.08 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.52 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 2.12 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 1.60 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 2.49 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.34 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.33 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.44 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.41 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.41 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.79 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.90 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.55 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.74 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.78 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.90 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.63 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.83 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 0.50 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.54 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.54 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 0.60 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 0.64 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 0.88 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 3.46 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 3.09 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 2.19 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 4.36 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.35 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.31 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.91 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.46 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.06 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.91 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.88 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.99 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.67 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.67 | MC |