| SRR4457249 | 2nd_leaf | DAH4 | 0.87 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.30 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.38 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.38 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.90 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.52 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.52 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.57 | MC |
| SRR358798 | callus | wt | 1.34 | MC |
| SRR5560727 | caryopsis | wild_type | 0.45 | MC |
| SRR5560728 | caryopsis | wild_type | 0.77 | MC |
| SRR5560729 | caryopsis | wild_type | 0.83 | MC |
| SRR4947495 | root | control | 0.81 | MC |
| SRR7265401 | coleoptile | 2dA | 0.93 | MC |
| SRR7265402 | coleoptile | 2dA | 0.52 | MC |
| SRR7265403 | coleoptile | 2dN | 2.04 | MC |
| SRR7265404 | coleoptile | 2dN | 0.75 | MC |
| SRR7265405 | coleoptile | 2dN | 0.64 | MC |
| SRR7265406 | coleoptile | 3dA | 2.32 | MC |
| SRR7265407 | coleoptile | 3dA | 0.68 | MC |
| SRR7265408 | coleoptile | 3dA | 1.41 | MC |
| SRR7265409 | coleoptile | 3dN | 0.67 | MC |
| SRR7265410 | coleoptile | 3dN | 2.09 | MC |
| SRR7265411 | coleoptile | 3dN | 0.51 | MC |
| SRR7265412 | coleoptile | 4dA | 0.53 | MC |
| SRR7265413 | coleoptile | 4dA | 0.68 | MC |
| SRR7265414 | coleoptile | 4dA | 1.37 | MC |
| SRR7265416 | coleoptile | 4dN | 1.02 | MC |
| SRR7265417 | coleoptile | 4dN | 1.56 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 0.69 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.96 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.49 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.83 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.48 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 2.73 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.07 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.23 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.84 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.29 | MC |
| SRR7265373 | embryo | dry seed 0 h | 2.49 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.77 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.35 | MC |
| SRR7265376 | embryo | 1hA | 3.48 | MC |
| SRR7265379 | embryo | 1hN | 0.90 | MC |
| SRR7265380 | embryo | 1hN | 1.94 | MC |
| SRR7265382 | embryo | 3hA | 1.58 | MC |
| SRR7265383 | embryo | 3hA | 3.46 | MC |
| SRR7265384 | embryo | 3hA | 1.84 | MC |
| SRR7265385 | embryo | 3hN | 3.83 | MC |
| SRR7265386 | embryo | 3hN | 1.59 | MC |
| SRR7265387 | embryo | 3hN | 2.60 | MC |
| SRR7265388 | embryo | 12hA | 0.72 | MC |
| SRR7265389 | embryo | 12hA | 3.79 | MC |
| SRR7265390 | embryo | 12hA | 1.41 | MC |
| SRR7265391 | embryo | 12hN | 1.20 | MC |
| SRR7265392 | embryo | 12hN | 0.42 | MC |
| SRR7265393 | embryo | 12hN | 0.89 | MC |
| SRR7265394 | embryo | 24hA | 1.45 | MC |
| SRR7265395 | embryo | 24hA | 1.01 | MC |
| SRR7265396 | embryo | 24hA | 1.27 | MC |
| SRR7265397 | embryo | 24hN | 2.39 | MC |
| SRR7265398 | embryo | 24hN | 2.77 | MC |
| SRR7265399 | embryo | 24hN | 0.61 | MC |
| SRR2338869 | endosprem | high_temperature | 1.11 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.49 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.12 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.44 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.31 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.64 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.35 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.23 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.49 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.78 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.51 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.83 | MC |
| SRR1213691 | flower | wt | 0.55 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.94 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.39 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.54 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.46 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.37 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.23 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.46 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.34 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.55 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 1.22 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.55 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 1.22 | MC |
| SRR1761529 | leaf | drought | 0.55 | MC |
| SRR1761531 | leaf | control | 1.22 | MC |
| SRR504365 | leaf | wt | 0.26 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.67 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.56 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.59 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.30 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.84 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.36 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.96 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.53 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.35 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.31 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.33 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.36 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.95 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.67 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.29 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.93 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.84 | MC |
| SRR6502088 | leaf | control | 0.44 | MC |
| SRR6502089 | leaf | control | 1.59 | MC |
| SRR6502090 | leaf | control | 0.98 | MC |
| SRR6502101 | leaf | control | 1.00 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 1.82 | MC |
| SRR6168973 | leaf | none (control) | 2.83 | MC |
| SRR6168974 | leaf | none (control) | 1.33 | MC |
| SRR6168975 | leaf | none (control) | 1.38 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 4.30 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 4.88 | MC |
| SRR6168979 | leaf | none (control) | 0.25 | MC |
| SRR6168980 | leaf | none (control) | 0.33 | MC |
| SRR6168981 | leaf | none (control) | 0.52 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.62 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.83 | MC |
| SRR8582889 | panicle | AM | 0.45 | MC |
| SRR8582891 | panicle | PM | 1.96 | MC |
| SRR5110429 | panicle | Dawn | 1.20 | MC |
| SRR5110431 | panicle | Dawn | 1.62 | MC |
| SRR5110432 | panicle | Dawn | 0.97 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 2.43 | MC |
| SRR5110437 | panicle | Dawn + 7h | 2.39 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.54 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 0.81 | MC |
| SRR5110446 | panicle | Dusk | 0.34 | MC |
| SRR5110447 | panicle | Dusk | 0.33 | MC |
| SRR5110448 | panicle | Dusk | 2.41 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.29 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.29 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.63 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.47 | MC |
| SRR5110459 | panicle | Dawn + 21h | 2.04 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.55 | MC |
| SRR1633182 | panicle | WT | 0.97 | MC |
| SRR1633185 | panicle | WT | 0.34 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.48 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.87 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.61 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.82 | MC |
| SRR5126165 | root | "mock,14_days" | 0.58 | MC |
| SRR5126167 | root | "mock,14_days" | 0.49 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.80 | MC |
| SRR4947479 | root | control | 1.53 | MC |
| SRR4947481 | root | control | 0.64 | MC |
| SRR4947483 | root | Al | 0.41 | MC |
| SRR4947487 | root | control | 0.90 | MC |
| SRR4947489 | root | control | 0.71 | MC |
| SRR4947490 | root | Al | 0.90 | MC |
| SRR4947498 | root | Al | 2.28 | MC |
| SRR4947499 | root | Al | 2.06 | MC |
| SRR4947503 | root | control | 1.24 | MC |
| SRR4947507 | root | Al | 2.03 | MC |
| SRR4947509 | root | Al | 0.89 | MC |
| SRR6502095 | root | control | 0.51 | MC |
| SRR6502096 | root | control | 0.51 | MC |
| SRR6502108 | root | control | 0.47 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.35 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.71 | MC |
| SRR6441555 | seedling | wild_type | 0.73 | MC |
| SRR2154086 | seedling | wt | 0.45 | MC |
| SRR2154083 | seedling | wt | 0.93 | MC |
| SRR2154084 | seedling | wt | 0.42 | MC |
| SRR2154085 | seedling | wt | 0.85 | MC |
| SRR2154087 | seedling | wt | 2.34 | MC |
| SRR3098741 | seedling | wt | 0.22 | MC |
| SRR3098742 | seedling | wt | 0.41 | MC |
| SRR3098743 | seedling | wt | 0.99 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.75 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.24 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.10 | MC |
| SRR1944583 | seedling | no_treatment | 0.40 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.03 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 9.31 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.28 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 3.97 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.91 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.43 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 2.75 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.96 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.36 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.13 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.76 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.26 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.54 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 2.26 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.54 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.76 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 2.56 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.67 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.43 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.52 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.48 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.59 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.21 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.48 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.86 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.97 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.82 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.63 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 1.20 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 3.39 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.83 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.78 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 2.82 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.54 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 2.62 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 2.28 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 3.88 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.87 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 2.07 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 3.02 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.50 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 3.64 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.58 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 2.12 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.74 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 3.97 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 5.41 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.61 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 2.25 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 3.30 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.83 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 3.61 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.00 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.11 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 4.11 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.59 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.42 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.55 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.21 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.66 | MC |