| SRR358795 | callus | wt | 2.43 | MC |
| SRR358796 | callus | wt | 1.13 | MC |
| SRR358797 | callus | wt | 2.35 | MC |
| SRR358798 | callus | wt | 1.61 | MC |
| SRR5560727 | caryopsis | wild_type | 0.50 | MC |
| SRR5560728 | caryopsis | wild_type | 0.49 | MC |
| SRR5560729 | caryopsis | wild_type | 0.34 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.43 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.84 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.72 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.45 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.91 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.98 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.11 | MC |
| SRR976168 | flag_leaf | wild_type | 0.53 | MC |
| SRR8240824 | leaf | wild_type | 1.43 | MC |
| SRR8240826 | leaf | wild_type | 1.48 | MC |
| SRR8240818 | leaf | wild_type | 1.66 | MC |
| SRR8240819 | leaf | wild_type | 1.71 | MC |
| SRR8240820 | leaf | wild_type | 2.50 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.03 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.92 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.54 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.49 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.08 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.88 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.65 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.96 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.46 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.80 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.94 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.82 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.69 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.19 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 1.22 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.76 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.90 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.77 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.05 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.80 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.61 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.37 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.23 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.53 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.88 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.09 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.74 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.66 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.18 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.66 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.18 | MC |
| SRR1761528 | leaf | drought | 1.66 | MC |
| SRR1761529 | leaf | drought | 1.18 | MC |
| SRR504365 | leaf | wt | 0.88 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.02 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.76 | MC |
| SRR6417967 | leaf | H2O_control | 0.59 | MC |
| SRR6417968 | leaf | H2O_control | 0.93 | MC |
| SRR6417969 | leaf | H2O_control | 0.98 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.38 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.22 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.31 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.46 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.55 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.61 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.30 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.34 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.88 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.03 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.00 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 3.74 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 2.14 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 3.32 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.46 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 2.19 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 3.46 | MC |
| SRR6502089 | leaf | control | 2.37 | MC |
| SRR6502090 | leaf | control | 2.35 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.34 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 2.81 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 2.23 | MC |
| SRR6502100 | leaf | control | 1.93 | MC |
| SRR6502101 | leaf | control | 1.03 | MC |
| SRR6502102 | leaf | control | 2.00 | MC |
| SRR6168973 | leaf | none (control) | 0.68 | MC |
| SRR6168974 | leaf | none (control) | 0.32 | MC |
| SRR6168975 | leaf | none (control) | 3.89 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.65 | MC |
| SRR6168979 | leaf | none (control) | 0.26 | MC |
| SRR8582891 | panicle | PM | 1.14 | MC |
| SRR8582892 | panicle | PM | 1.35 | MC |
| SRR8582893 | panicle | PM | 0.83 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.46 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.99 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.73 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.22 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.65 | MC |
| SRR5126147 | root | "mock,1_day" | 0.82 | MC |
| SRR5126148 | root | "mock,1_day" | 0.45 | MC |
| SRR5126149 | root | "mock,1_day" | 1.32 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.80 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 2.75 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.94 | MC |
| SRR5126153 | root | "mock,7_days" | 0.35 | MC |
| SRR5126155 | root | "mock,7_days" | 1.56 | MC |
| SRR5126157 | root | "mock,7_days" | 0.55 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.08 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.57 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.42 | MC |
| SRR5126165 | root | "mock,14_days" | 1.77 | MC |
| SRR5126167 | root | "mock,14_days" | 1.54 | MC |
| SRR5126169 | root | "mock,14_days" | 0.48 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.62 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.64 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.82 | MC |
| SRR1213694 | root | wt | 2.62 | MC |
| SRR6502091 | root | 100 mM NaCl | 3.21 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.44 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.52 | MC |
| SRR6502094 | root | control | 0.91 | MC |
| SRR6502095 | root | control | 0.48 | MC |
| SRR6502096 | root | control | 0.51 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.87 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.79 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.68 | MC |
| SRR6502106 | root | control | 0.91 | MC |
| SRR6502107 | root | control | 0.30 | MC |
| SRR6502108 | root | control | 0.47 | MC |
| SRR1740434 | root_differentiation_zone | wt | 2.16 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.24 | MC |
| SRR6441554 | seedling | wild_type | 0.63 | MC |
| SRR6441555 | seedling | wild_type | 0.44 | MC |
| SRR2154086 | seedling | wt | 1.83 | MC |
| SRR2154085 | seedling | wt | 2.52 | MC |
| SRR2154087 | seedling | wt | 1.38 | MC |
| SRR3098741 | seedling | wt | 0.96 | MC |
| SRR3098742 | seedling | wt | 0.51 | MC |
| SRR3098743 | seedling | wt | 0.62 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.57 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.61 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.61 | MC |
| SRR358791 | seedling | wt | 1.83 | MC |
| SRR358792 | seedling | wt | 1.51 | MC |
| SRR358793 | seedling | wt | 1.70 | MC |
| SRR358794 | seedling | wt | 1.65 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.61 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.18 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.82 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 9.37 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.29 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.67 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.81 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.84 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.77 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 1.17 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.55 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.77 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.85 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.28 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.25 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.81 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.81 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.02 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.91 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.54 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.37 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.59 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.13 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.64 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.05 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.07 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.88 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 4.56 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 3.73 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 0.84 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.43 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.51 | MC |