| SRR4457252 | 2nd_leaf | DAH12 | 0.91 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.43 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.63 | MC |
| SRR3745127 | anther | wt | 3.23 | MC |
| SRR358796 | callus | wt | 7.92 | MC |
| SRR358798 | callus | wt | 7.62 | MC |
| SRR6320473 | carpel | wt | 1.13 | MC |
| SRR5560727 | caryopsis | wild_type | 4.75 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.43 | MC |
| SRR4947495 | root | control | 2.79 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.06 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.30 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.94 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.35 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 2.24 | MC |
| SRR7265379 | embryo | 1hN | 0.74 | MC |
| SRR7265381 | embryo | 1hN | 0.70 | MC |
| SRR2338868 | endosprem | high_temperature | 0.89 | MC |
| SRR2338869 | endosprem | high_temperature | 2.00 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.58 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.29 | MC |
| SRR1213691 | flower | wt | 1.23 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.42 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.87 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.03 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.36 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.02 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.15 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.85 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.98 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.09 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.60 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.75 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.94 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.35 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.37 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.44 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.61 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.39 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.74 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.74 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.73 | MC |
| SRR6417967 | leaf | H2O_control | 0.44 | MC |
| SRR6417969 | leaf | H2O_control | 1.16 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.62 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.21 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.55 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.53 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.28 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.93 | MC |
| SRR1213692 | leaf | wt | 1.62 | MC |
| SRR1213693 | leaf | wt | 1.24 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.57 | MC |
| SRR6502089 | leaf | control | 2.59 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.91 | MC |
| SRR5856928 | leaf | control | 0.21 | MC |
| SRR5856929 | leaf | control | 0.37 | MC |
| SRR5856930 | leaf | salt | 0.22 | MC |
| SRR5856934 | leaf | control | 0.54 | MC |
| SRR5856937 | leaf | salt | 0.60 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 2.09 | MC |
| SRR8582888 | panicle | AM | 1.08 | MC |
| SRR8582889 | panicle | AM | 0.41 | MC |
| SRR5110429 | panicle | Dawn | 0.50 | MC |
| SRR5110430 | panicle | Dawn | 0.73 | MC |
| SRR5110431 | panicle | Dawn | 1.08 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 3.20 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.65 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.43 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.63 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.22 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 2.78 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.22 | MC |
| SRR5110445 | panicle | Dusk | 1.59 | MC |
| SRR5110446 | panicle | Dusk | 0.40 | MC |
| SRR5110447 | panicle | Dusk | 0.61 | MC |
| SRR5110449 | panicle | Dawn + 14h | 2.87 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.01 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.03 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.45 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.90 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.75 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.54 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.25 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.53 | MC |
| SRR5126148 | root | "mock,1_day" | 0.72 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 2.14 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.55 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.62 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 3.14 | MC |
| SRR5126169 | root | "mock,14_days" | 2.10 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 4.11 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.84 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 4.90 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.60 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.24 | MC |
| SRR1213694 | root | wt | 2.24 | MC |
| SRR1213695 | root | wt | 1.03 | MC |
| SRR4947478 | root | control | 2.02 | MC |
| SRR4947485 | root | Al | 2.13 | MC |
| SRR4947487 | root | control | 2.74 | MC |
| SRR4947489 | root | control | 0.51 | MC |
| SRR4947494 | root | control | 2.02 | MC |
| SRR4947497 | root | control | 0.97 | MC |
| SRR4947502 | root | control | 4.78 | MC |
| SRR4947505 | root | control | 2.93 | MC |
| SRR4947506 | root | Al | 1.82 | MC |
| SRR4947507 | root | Al | 4.88 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.24 | MC |
| SRR6502094 | root | control | 0.86 | MC |
| SRR6502095 | root | control | 0.76 | MC |
| SRR6502096 | root | control | 1.21 | MC |
| SRR6502103 | root | 100 mM NaCl | 2.32 | MC |
| SRR6502106 | root | control | 0.55 | MC |
| SRR6502107 | root | control | 1.69 | MC |
| SRR6502108 | root | control | 4.03 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.24 | MC |
| SRR2154086 | seedling | wt | 2.16 | MC |
| SRR2154085 | seedling | wt | 2.96 | MC |
| SRR2154087 | seedling | wt | 2.04 | MC |
| SRR3098741 | seedling | wt | 0.68 | MC |
| SRR3098742 | seedling | wt | 0.77 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.23 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.69 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 2.28 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 3.06 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.83 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.98 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.38 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.42 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.43 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.64 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.70 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.62 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.28 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.07 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.46 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.62 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.94 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 2.73 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 3.52 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 4.85 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 3.91 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 2.73 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.81 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.84 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 2.23 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.23 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.85 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.54 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.81 | MC |