| SRR358795 | callus | wt | 4.73 | MC |
| SRR358796 | callus | wt | 3.39 | MC |
| SRR358798 | callus | wt | 7.38 | MC |
| SRR5560729 | caryopsis | wild_type | 0.63 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 4.16 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 3.15 | MC |
| SRR7265402 | coleoptile | 2dA | 0.32 | MC |
| SRR7265413 | coleoptile | 4dA | 0.86 | MC |
| SRR7265414 | coleoptile | 4dA | 1.58 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.43 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.21 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.84 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.70 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.69 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.61 | MC |
| SRR7265377 | embryo | 1hA | 1.44 | MC |
| SRR7265379 | embryo | 1hN | 0.25 | MC |
| SRR7265382 | embryo | 3hA | 0.84 | MC |
| SRR7265383 | embryo | 3hA | 0.66 | MC |
| SRR7265392 | embryo | 12hN | 1.25 | MC |
| SRR2338867 | endosprem | control | 0.60 | MC |
| SRR2338869 | endosprem | high_temperature | 0.99 | MC |
| SRR976168 | flag_leaf | wild_type | 0.73 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.23 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.91 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.92 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.32 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 3.24 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.60 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.54 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.39 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.10 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.38 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.92 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.63 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.17 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.90 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.28 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.20 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 1.23 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 0.83 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.77 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.97 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.94 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.40 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.96 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.32 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.32 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.64 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.52 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.55 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.39 | MC |
| SRR504365 | leaf | wt | 0.22 | MC |
| SRR6417967 | leaf | H2O_control | 0.80 | MC |
| SRR6417968 | leaf | H2O_control | 0.37 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.52 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 1.50 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.55 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.89 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.34 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.31 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.00 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.61 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.35 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.29 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.51 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.64 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.28 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.67 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.19 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.43 | MC |
| SRR6502088 | leaf | control | 1.70 | MC |
| SRR6502089 | leaf | control | 1.49 | MC |
| SRR6502090 | leaf | control | 1.40 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.59 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.97 | MC |
| SRR6502100 | leaf | control | 0.70 | MC |
| SRR6502101 | leaf | control | 0.71 | MC |
| SRR6502102 | leaf | control | 0.55 | MC |
| SRR6168975 | leaf | none (control) | 2.24 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.62 | MC |
| SRR6168980 | leaf | none (control) | 0.99 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 2.18 | MC |
| SRR8582888 | panicle | AM | 1.95 | MC |
| SRR8582889 | panicle | AM | 0.55 | MC |
| SRR8582891 | panicle | PM | 2.50 | MC |
| SRR8582892 | panicle | PM | 2.32 | MC |
| SRR5110429 | panicle | Dawn | 2.03 | MC |
| SRR5110430 | panicle | Dawn | 4.35 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 3.81 | MC |
| SRR5110437 | panicle | Dawn + 7h | 2.80 | MC |
| SRR5110439 | panicle | Dawn + 7h | 5.42 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.31 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 4.22 | MC |
| SRR5110446 | panicle | Dusk | 1.44 | MC |
| SRR5110447 | panicle | Dusk | 3.20 | MC |
| SRR5110448 | panicle | Dusk | 2.73 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.89 | MC |
| SRR5110452 | panicle | Dawn + 14h | 2.58 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.62 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.73 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.72 | MC |
| SRR5110457 | panicle | Dawn + 21h | 2.07 | MC |
| SRR5110458 | panicle | Dawn + 21h | 3.20 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.54 | MC |
| SRR5126149 | root | "mock,1_day" | 1.29 | MC |
| SRR5126153 | root | "mock,7_days" | 1.72 | MC |
| SRR5126155 | root | "mock,7_days" | 0.41 | MC |
| SRR5126157 | root | "mock,7_days" | 0.72 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.65 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.55 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.83 | MC |
| SRR5126165 | root | "mock,14_days" | 0.72 | MC |
| SRR5126167 | root | "mock,14_days" | 3.36 | MC |
| SRR5126169 | root | "mock,14_days" | 2.10 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.29 | MC |
| SRR1213694 | root | wt | 1.37 | MC |
| SRR4947493 | root | Al | 0.93 | MC |
| SRR4947500 | root | Al | 1.04 | MC |
| SRR4947504 | root | control | 1.16 | MC |
| SRR4947509 | root | Al | 0.49 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.93 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.67 | MC |
| SRR6502103 | root | 100 mM NaCl | 3.54 | MC |
| SRR6502106 | root | control | 1.84 | MC |
| SRR6502107 | root | control | 2.30 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.40 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.77 | MC |
| SRR6441554 | seedling | wild_type | 1.50 | MC |
| SRR6441555 | seedling | wild_type | 2.76 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.61 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.73 | MC |
| SRR358791 | seedling | wt | 2.83 | MC |
| SRR358792 | seedling | wt | 2.45 | MC |
| SRR358793 | seedling | wt | 2.09 | MC |
| SRR358794 | seedling | wt | 1.36 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.06 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.84 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.71 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.75 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.49 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.53 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.13 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.98 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.30 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.30 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 1.24 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.54 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.72 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.26 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.22 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.96 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.52 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.31 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.82 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.34 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.69 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.70 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.13 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.00 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.00 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.17 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.17 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.66 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.44 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.38 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.07 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.91 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.48 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 3.16 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.97 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 2.24 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.01 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.77 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 2.78 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 2.68 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.38 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.50 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.47 | MC |