| SRR4457253 | 2nd_leaf | DAH12 | 0.29 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.26 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.84 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.39 | MC |
| SRR3745125 | anther | wt | 2.17 | MC |
| SRR3745126 | anther | wt | 1.07 | MC |
| SRR3745127 | anther | wt | 0.99 | MC |
| SRR358795 | callus | wt | 1.19 | MC |
| SRR358797 | callus | wt | 1.36 | MC |
| SRR358798 | callus | wt | 1.36 | MC |
| SRR5560727 | caryopsis | wild_type | 0.79 | MC |
| SRR5560728 | caryopsis | wild_type | 0.63 | MC |
| SRR5560729 | caryopsis | wild_type | 1.66 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.68 | MC |
| SRR4947495 | root | control | 0.51 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.34 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.55 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.41 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.49 | MC |
| SRR7265388 | embryo | 12hA | 0.52 | MC |
| SRR7265389 | embryo | 12hA | 1.34 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.56 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.55 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.37 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.49 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.03 | MC |
| SRR1213691 | flower | wt | 0.32 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.65 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.19 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.49 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.53 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.57 | MC |
| SRR504365 | leaf | wt | 0.57 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.67 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.46 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.54 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.69 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.90 | MC |
| SRR1213692 | leaf | wt | 0.59 | MC |
| SRR1213693 | leaf | wt | 0.56 | MC |
| SRR5856933 | leaf | control | 0.19 | MC |
| SRR5856938 | leaf | salt | 0.28 | MC |
| SRR6168973 | leaf | none (control) | 0.67 | MC |
| SRR6168974 | leaf | none (control) | 0.50 | MC |
| SRR6168980 | leaf | none (control) | 0.19 | MC |
| SRR8582892 | panicle | PM | 1.04 | MC |
| SRR8582893 | panicle | PM | 0.99 | MC |
| SRR5110429 | panicle | Dawn | 1.26 | MC |
| SRR5110432 | panicle | Dawn | 0.79 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.72 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.49 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.06 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.32 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.70 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.78 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 0.58 | MC |
| SRR5110445 | panicle | Dusk | 1.01 | MC |
| SRR5110446 | panicle | Dusk | 0.56 | MC |
| SRR5110447 | panicle | Dusk | 0.86 | MC |
| SRR5110448 | panicle | Dusk | 0.83 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.26 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.78 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.61 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.80 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.60 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.59 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.57 | MC |
| SRR1633185 | panicle | WT | 1.50 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.23 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.93 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.60 | MC |
| SRR5126147 | root | "mock,1_day" | 0.56 | MC |
| SRR5126148 | root | "mock,1_day" | 0.85 | MC |
| SRR5126149 | root | "mock,1_day" | 0.64 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.79 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.60 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.67 | MC |
| SRR5126155 | root | "mock,7_days" | 0.68 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.89 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.20 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.46 | MC |
| SRR5126165 | root | "mock,14_days" | 0.56 | MC |
| SRR5126167 | root | "mock,14_days" | 0.63 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.40 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.40 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.22 | MC |
| SRR1213694 | root | wt | 1.37 | MC |
| SRR1213695 | root | wt | 0.29 | MC |
| SRR4947478 | root | control | 0.77 | MC |
| SRR4947489 | root | control | 1.53 | MC |
| SRR4947490 | root | Al | 0.55 | MC |
| SRR4947498 | root | Al | 0.84 | MC |
| SRR4947503 | root | control | 0.65 | MC |
| SRR6502096 | root | control | 0.96 | MC |
| SRR2154083 | seedling | wt | 0.74 | MC |
| SRR2154087 | seedling | wt | 0.88 | MC |
| SRR3098741 | seedling | wt | 0.72 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.37 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.54 | MC |
| SRR358792 | seedling | wt | 0.94 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.84 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.13 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.00 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.51 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.78 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.23 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.49 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.82 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.52 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.34 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.59 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.57 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.07 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.41 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.80 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.52 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.66 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.59 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.78 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.65 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.92 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.54 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.95 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.60 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.57 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.51 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.50 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.50 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.75 | MC |