| SRR358795 | callus | wt | 1.72 | MC |
| SRR358796 | callus | wt | 3.17 | MC |
| SRR5560727 | caryopsis | wild_type | 1.45 | MC |
| SRR5560728 | caryopsis | wild_type | 2.86 | MC |
| SRR5560729 | caryopsis | wild_type | 1.01 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.81 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.56 | MC |
| SRR4947495 | root | control | 0.85 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.22 | MC |
| SRR7265400 | coleoptile | 2dA | 1.20 | MC |
| SRR7265401 | coleoptile | 2dA | 0.40 | MC |
| SRR7265402 | coleoptile | 2dA | 0.43 | MC |
| SRR7265403 | coleoptile | 2dN | 0.76 | MC |
| SRR7265404 | coleoptile | 2dN | 2.01 | MC |
| SRR7265405 | coleoptile | 2dN | 0.92 | MC |
| SRR7265409 | coleoptile | 3dN | 0.88 | MC |
| SRR7265411 | coleoptile | 3dN | 0.88 | MC |
| SRR7265412 | coleoptile | 4dA | 1.80 | MC |
| SRR7265413 | coleoptile | 4dA | 1.62 | MC |
| SRR7265414 | coleoptile | 4dA | 1.35 | MC |
| SRR7265415 | coleoptile | 4dN | 0.57 | MC |
| SRR7265417 | coleoptile | 4dN | 0.44 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.62 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 0.54 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.21 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.80 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.44 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.56 | MC |
| SRR7265389 | embryo | 12hA | 0.57 | MC |
| SRR7265390 | embryo | 12hA | 0.75 | MC |
| SRR7265394 | embryo | 24hA | 0.81 | MC |
| SRR7265396 | embryo | 24hA | 0.62 | MC |
| SRR7265399 | embryo | 24hN | 0.45 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.33 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.88 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.15 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.77 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.64 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.20 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.98 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.56 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.54 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.41 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.66 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.80 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.37 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.62 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.29 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.47 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 2.43 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.36 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.64 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.44 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.06 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.51 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.39 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.28 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.11 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.48 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.71 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.71 | MC |
| SRR1761528 | leaf | drought | 1.71 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.30 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.47 | MC |
| SRR6417967 | leaf | H2O_control | 0.51 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.90 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.94 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.13 | MC |
| SRR1213693 | leaf | wt | 2.31 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.79 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.55 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.45 | MC |
| SRR6502089 | leaf | control | 0.54 | MC |
| SRR5856927 | leaf | control | 1.31 | MC |
| SRR5856928 | leaf | control | 0.42 | MC |
| SRR5856929 | leaf | control | 0.76 | MC |
| SRR5856930 | leaf | salt | 1.25 | MC |
| SRR5856931 | leaf | salt | 1.01 | MC |
| SRR5856932 | leaf | salt | 0.27 | MC |
| SRR5856933 | leaf | control | 0.23 | MC |
| SRR5856934 | leaf | control | 0.73 | MC |
| SRR5856935 | leaf | control | 0.89 | MC |
| SRR5856936 | leaf | salt | 0.74 | MC |
| SRR5856937 | leaf | salt | 0.82 | MC |
| SRR5856938 | leaf | salt | 0.67 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 3.63 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 2.58 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 2.72 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 4.24 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 3.02 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 2.95 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 3.63 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 4.12 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 3.94 | MC |
| SRR6168974 | leaf | none (control) | 0.40 | MC |
| SRR6168975 | leaf | none (control) | 1.48 | MC |
| SRR8582890 | panicle | AM | 0.61 | MC |
| SRR5110430 | panicle | Dawn | 3.22 | MC |
| SRR5110431 | panicle | Dawn | 3.33 | MC |
| SRR5110432 | panicle | Dawn | 3.24 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 3.04 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 3.05 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.69 | MC |
| SRR5110439 | panicle | Dawn + 7h | 2.65 | MC |
| SRR5110440 | panicle | Dawn + 7h | 3.85 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.09 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 2.61 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.86 | MC |
| SRR5110446 | panicle | Dusk | 2.19 | MC |
| SRR5110447 | panicle | Dusk | 2.21 | MC |
| SRR5110448 | panicle | Dusk | 3.70 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.12 | MC |
| SRR5110450 | panicle | Dawn + 14h | 2.89 | MC |
| SRR5110451 | panicle | Dawn + 14h | 3.57 | MC |
| SRR5110452 | panicle | Dawn + 14h | 3.66 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 2.94 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 2.88 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 3.39 | MC |
| SRR5110457 | panicle | Dawn + 21h | 2.57 | MC |
| SRR5110458 | panicle | Dawn + 21h | 2.31 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.03 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.68 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.70 | MC |
| SRR5126147 | root | "mock,1_day" | 0.75 | MC |
| SRR5126148 | root | "mock,1_day" | 0.59 | MC |
| SRR5126149 | root | "mock,1_day" | 0.58 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.93 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 2.10 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.24 | MC |
| SRR5126153 | root | "mock,7_days" | 0.95 | MC |
| SRR5126155 | root | "mock,7_days" | 0.92 | MC |
| SRR5126157 | root | "mock,7_days" | 0.55 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.40 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.63 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.25 | MC |
| SRR5126165 | root | "mock,14_days" | 1.01 | MC |
| SRR5126167 | root | "mock,14_days" | 2.73 | MC |
| SRR5126169 | root | "mock,14_days" | 0.34 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.69 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.77 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.85 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.43 | MC |
| SRR1213694 | root | wt | 0.97 | MC |
| SRR1213695 | root | wt | 1.21 | MC |
| SRR4947481 | root | control | 1.09 | MC |
| SRR4947482 | root | Al | 0.63 | MC |
| SRR4947487 | root | control | 1.15 | MC |
| SRR4947494 | root | control | 1.22 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.70 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.52 | MC |
| SRR6502096 | root | control | 0.44 | MC |
| SRR2154086 | seedling | wt | 1.83 | MC |
| SRR2154082 | seedling | wt | 1.44 | MC |
| SRR2154087 | seedling | wt | 3.22 | MC |
| SRR3098742 | seedling | wt | 2.66 | MC |
| SRR3098743 | seedling | wt | 1.35 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.46 | MC |
| SRR358793 | seedling | wt | 0.92 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.88 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.42 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 11.02 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.79 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.09 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.27 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.22 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.29 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.40 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 2.22 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 3.21 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 2.46 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 3.13 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.53 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.43 | MC |