| SRR358795 | callus | wt | 2.08 | MC |
| SRR358796 | callus | wt | 3.23 | MC |
| SRR358797 | callus | wt | 2.41 | MC |
| SRR358798 | callus | wt | 2.11 | MC |
| SRR5560727 | caryopsis | wild_type | 0.30 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.46 | MC |
| SRR7265400 | coleoptile | 2dA | 0.37 | MC |
| SRR7265401 | coleoptile | 2dA | 0.45 | MC |
| SRR7265403 | coleoptile | 2dN | 3.10 | MC |
| SRR7265404 | coleoptile | 2dN | 2.16 | MC |
| SRR7265405 | coleoptile | 2dN | 2.51 | MC |
| SRR7265412 | coleoptile | 4dA | 1.41 | MC |
| SRR7265413 | coleoptile | 4dA | 0.83 | MC |
| SRR7265414 | coleoptile | 4dA | 0.65 | MC |
| SRR7265415 | coleoptile | 4dN | 3.72 | MC |
| SRR7265416 | coleoptile | 4dN | 3.96 | MC |
| SRR7265417 | coleoptile | 4dN | 3.86 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.42 | MC |
| SRR7265373 | embryo | dry seed 0 h | 2.85 | MC |
| SRR7265374 | embryo | dry seed 0 h | 2.26 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.90 | MC |
| SRR7265376 | embryo | 1hA | 2.98 | MC |
| SRR7265378 | embryo | 1hA | 3.04 | MC |
| SRR7265379 | embryo | 1hN | 2.05 | MC |
| SRR7265380 | embryo | 1hN | 3.46 | MC |
| SRR7265381 | embryo | 1hN | 2.50 | MC |
| SRR7265385 | embryo | 3hN | 1.78 | MC |
| SRR7265387 | embryo | 3hN | 3.10 | MC |
| SRR7265389 | embryo | 12hA | 0.80 | MC |
| SRR7265390 | embryo | 12hA | 0.46 | MC |
| SRR7265391 | embryo | 12hN | 3.17 | MC |
| SRR7265392 | embryo | 12hN | 2.89 | MC |
| SRR7265393 | embryo | 12hN | 3.75 | MC |
| SRR7265394 | embryo | 24hA | 0.76 | MC |
| SRR7265395 | embryo | 24hA | 0.77 | MC |
| SRR7265396 | embryo | 24hA | 1.00 | MC |
| SRR7265397 | embryo | 24hN | 3.09 | MC |
| SRR7265398 | embryo | 24hN | 2.32 | MC |
| SRR7265399 | embryo | 24hN | 2.31 | MC |
| SRR2338869 | endosprem | high_temperature | 1.09 | MC |
| SRR976168 | flag_leaf | wild_type | 0.97 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.38 | MC |
| SRR504365 | leaf | wt | 0.28 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.34 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.24 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.36 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.21 | MC |
| SRR1213692 | leaf | wt | 0.32 | MC |
| SRR1213693 | leaf | wt | 0.44 | MC |
| SRR6168974 | leaf | none (control) | 0.83 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.20 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.64 | MC |
| SRR6168981 | leaf | none (control) | 0.97 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.22 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 2.20 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.40 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.82 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.97 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.27 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.45 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.73 | MC |
| SRR1213695 | root | wt | 0.73 | MC |
| SRR4947488 | root | control | 0.59 | MC |
| SRR4947492 | root | Al | 0.62 | MC |
| SRR4947504 | root | control | 0.51 | MC |
| SRR358793 | seedling | wt | 0.64 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.97 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.50 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.33 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 11.80 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.04 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.94 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.93 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.84 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.50 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.17 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.50 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.60 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.60 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.37 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.56 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.41 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.03 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.47 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.32 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.46 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.53 | MC |