| SRR4457253 | 2nd_leaf | DAH12 | 0.64 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.73 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.48 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.11 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.86 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.35 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 0.93 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 2.13 | MC |
| SRR6320473 | carpel | wt | 1.80 | MC |
| SRR6320498 | carpel | wt | 1.88 | MC |
| SRR5560727 | caryopsis | wild_type | 0.26 | MC |
| SRR5560728 | caryopsis | wild_type | 0.29 | MC |
| SRR5560729 | caryopsis | wild_type | 0.84 | MC |
| SRR7265400 | coleoptile | 2dA | 0.94 | MC |
| SRR7265401 | coleoptile | 2dA | 0.84 | MC |
| SRR7265402 | coleoptile | 2dA | 1.06 | MC |
| SRR7265406 | coleoptile | 3dA | 0.32 | MC |
| SRR7265407 | coleoptile | 3dA | 0.33 | MC |
| SRR7265414 | coleoptile | 4dA | 0.96 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.70 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.65 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.62 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.68 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.68 | MC |
| SRR7265376 | embryo | 1hA | 0.89 | MC |
| SRR7265377 | embryo | 1hA | 0.62 | MC |
| SRR7265378 | embryo | 1hA | 0.73 | MC |
| SRR7265379 | embryo | 1hN | 0.95 | MC |
| SRR7265380 | embryo | 1hN | 0.58 | MC |
| SRR7265381 | embryo | 1hN | 0.77 | MC |
| SRR7265382 | embryo | 3hA | 0.60 | MC |
| SRR7265383 | embryo | 3hA | 0.75 | MC |
| SRR7265384 | embryo | 3hA | 0.51 | MC |
| SRR7265385 | embryo | 3hN | 0.95 | MC |
| SRR7265386 | embryo | 3hN | 0.36 | MC |
| SRR7265387 | embryo | 3hN | 0.52 | MC |
| SRR7265389 | embryo | 12hA | 0.67 | MC |
| SRR7265390 | embryo | 12hA | 0.64 | MC |
| SRR7265391 | embryo | 12hN | 0.50 | MC |
| SRR7265395 | embryo | 24hA | 0.51 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.17 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.45 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.62 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.04 | MC |
| SRR4457248 | flag_leaf | DAH44 | 0.94 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.36 | MC |
| SRR1213691 | flower | wt | 0.32 | MC |
| SRR8060836 | leaf | wild_type | 0.34 | MC |
| SRR8240820 | leaf | wild_type | 0.91 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.17 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.07 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.62 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.57 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.59 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.68 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.41 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.48 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.50 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.87 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.62 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.68 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.79 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.28 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.66 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.22 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.96 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.47 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.40 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.69 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.89 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.43 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.39 | MC |
| SRR504365 | leaf | wt | 0.55 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.49 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.50 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.08 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.61 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.62 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.65 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.22 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.25 | MC |
| SRR1213692 | leaf | wt | 0.52 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.67 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.61 | MC |
| SRR6502089 | leaf | control | 0.33 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.38 | MC |
| SRR6168979 | leaf | none (control) | 0.37 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.35 | MC |
| SRR5110446 | panicle | Dusk | 0.47 | MC |
| SRR5110447 | panicle | Dusk | 0.33 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.18 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.27 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.90 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.06 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.15 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.44 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.52 | MC |
| SRR5126149 | root | "mock,1_day" | 0.73 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.56 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.59 | MC |
| SRR5126155 | root | "mock,7_days" | 0.64 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.58 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.90 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.56 | MC |
| SRR5126165 | root | "mock,14_days" | 0.72 | MC |
| SRR5126167 | root | "mock,14_days" | 0.86 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.80 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.35 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.37 | MC |
| SRR1213695 | root | wt | 0.25 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.34 | MC |
| SRR6502095 | root | control | 0.41 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.37 | MC |
| SRR358792 | seedling | wt | 1.91 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.25 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.19 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.35 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.43 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.27 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.70 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.79 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.88 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.37 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.39 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 3.08 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 2.64 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.04 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 0.86 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 3.16 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 1.31 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 2.61 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 0.98 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.13 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.09 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.39 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.12 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 2.15 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 2.33 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 1.73 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.46 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 2.19 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 1.18 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 2.08 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.24 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 1.53 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.15 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 5.23 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 0.86 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.51 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.50 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.33 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.53 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.43 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.03 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.49 | MC |