| SRR4457249 | 2nd_leaf | DAH4 | 0.53 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 1.14 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 2.98 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.37 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 1.02 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 2.50 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.30 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 2.90 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 2.87 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 1.50 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 3.44 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.50 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.66 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.29 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.80 | MC |
| SRR3745126 | anther | wt | 1.54 | MC |
| SRR3745127 | anther | wt | 1.56 | MC |
| SRR358795 | callus | wt | 9.84 | MC |
| SRR358796 | callus | wt | 6.43 | MC |
| SRR5560729 | caryopsis | wild_type | 3.64 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.80 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.53 | MC |
| SRR7265406 | coleoptile | 3dA | 0.32 | MC |
| SRR7265407 | coleoptile | 3dA | 0.25 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.54 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 3.18 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.04 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.08 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.65 | MC |
| SRR7265378 | embryo | 1hA | 0.28 | MC |
| SRR7265383 | embryo | 3hA | 0.80 | MC |
| SRR7265387 | embryo | 3hN | 0.53 | MC |
| SRR7265390 | embryo | 12hA | 0.38 | MC |
| SRR7265398 | embryo | 24hN | 0.62 | MC |
| SRR7265399 | embryo | 24hN | 0.47 | MC |
| SRR2338866 | endosprem | control | 2.39 | MC |
| SRR2338867 | endosprem | control | 1.40 | MC |
| SRR2338869 | endosprem | high_temperature | 2.73 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.46 | MC |
| SRR4457232 | flag_leaf | DAH4 | 1.37 | MC |
| SRR4457233 | flag_leaf | DAH4 | 1.46 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.51 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.12 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.09 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.52 | MC |
| SRR4457238 | flag_leaf | DAH20 | 1.24 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.90 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.70 | MC |
| SRR4457241 | flag_leaf | DAH28 | 2.68 | MC |
| SRR4457242 | flag_leaf | DAH28 | 1.73 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.60 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.26 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.56 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.96 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.61 | MC |
| SRR8060835 | leaf | wild_type | 1.61 | MC |
| SRR8240824 | leaf | wild_type | 1.65 | MC |
| SRR8240826 | leaf | wild_type | 0.71 | MC |
| SRR8240819 | leaf | wild_type | 1.41 | MC |
| SRR8240820 | leaf | wild_type | 0.99 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.80 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.05 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.02 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.83 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.63 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.20 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.28 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.96 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.70 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.38 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.51 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.41 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.49 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.50 | MC |
| SRR1761529 | leaf | drought | 1.50 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.79 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.84 | MC |
| SRR6417967 | leaf | H2O_control | 2.46 | MC |
| SRR6417968 | leaf | H2O_control | 0.75 | MC |
| SRR6417969 | leaf | H2O_control | 0.65 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.26 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.91 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.18 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.65 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.77 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.37 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.61 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.47 | MC |
| SRR1213692 | leaf | wt | 4.47 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 2.54 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 2.80 | MC |
| SRR6502100 | leaf | control | 1.56 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 6.00 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 2.01 | MC |
| SRR6168979 | leaf | none (control) | 0.24 | MC |
| SRR6168981 | leaf | none (control) | 0.21 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.23 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.25 | MC |
| SRR8582889 | panicle | AM | 1.15 | MC |
| SRR8582891 | panicle | PM | 1.99 | MC |
| SRR8582893 | panicle | PM | 0.48 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.66 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.92 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.69 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.52 | MC |
| SRR5126147 | root | "mock,1_day" | 2.34 | MC |
| SRR5126149 | root | "mock,1_day" | 3.54 | MC |
| SRR5126155 | root | "mock,7_days" | 3.10 | MC |
| SRR5126157 | root | "mock,7_days" | 4.71 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 3.09 | MC |
| SRR5126165 | root | "mock,14_days" | 3.41 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 3.50 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 3.11 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.49 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 2.03 | MC |
| SRR1213695 | root | wt | 1.11 | MC |
| SRR4947484 | root | Al | 0.68 | MC |
| SRR4947488 | root | control | 0.98 | MC |
| SRR4947508 | root | Al | 0.67 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.15 | MC |
| SRR6502095 | root | control | 2.69 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.43 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.85 | MC |
| SRR6502106 | root | control | 4.45 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.44 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.83 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.17 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.52 | MC |
| SRR6441554 | seedling | wild_type | 0.71 | MC |
| SRR6441555 | seedling | wild_type | 0.47 | MC |
| SRR2154086 | seedling | wt | 1.89 | MC |
| SRR2154085 | seedling | wt | 1.44 | MC |
| SRR2154087 | seedling | wt | 3.46 | MC |
| SRR3098741 | seedling | wt | 0.79 | MC |
| SRR3098742 | seedling | wt | 0.98 | MC |
| SRR3098743 | seedling | wt | 2.05 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.88 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.72 | MC |
| SRR2857721 | seedling | drought_stress_6h | 2.46 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 3.42 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.87 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.22 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.00 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.79 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 3.00 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 3.06 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.89 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.39 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.41 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.69 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.37 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.56 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.30 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.32 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.51 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.50 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.75 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.59 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.76 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.39 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.97 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.23 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 7.88 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.63 | MC |